View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19930_high_37 (Length: 238)

Name: NF19930_high_37
Description: NF19930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19930_high_37
NF19930_high_37
[»] chr1 (3 HSPs)
chr1 (1-107)||(29443134-29443240)
chr1 (15-106)||(29453131-29453222)
chr1 (9-106)||(29423489-29423586)
[»] chr4 (2 HSPs)
chr4 (121-222)||(18343150-18343251)
chr4 (164-210)||(22101579-22101625)
[»] chr2 (6 HSPs)
chr2 (121-222)||(36840925-36841026)
chr2 (21-108)||(9274734-9274821)
chr2 (21-108)||(10336060-10336147)
chr2 (38-108)||(7115480-7115550)
chr2 (13-55)||(9316300-9316342)
chr2 (13-53)||(9321250-9321290)
[»] scaffold0002 (1 HSPs)
scaffold0002 (122-222)||(164118-164218)
[»] chr3 (1 HSPs)
chr3 (121-222)||(18375047-18375148)
[»] scaffold1779 (1 HSPs)
scaffold1779 (155-222)||(457-524)
[»] chr7 (1 HSPs)
chr7 (122-222)||(46634322-46634426)


Alignment Details
Target: chr1 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 29443134 - 29443240
Alignment:
Q  1 gctcgaagaacaatgggggattttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29443134 gctcgaagaacaatgggggattttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacc 29443233  T
Q  101 taacact 107  Q
    |||||||    
T  29443234 taacact 29443240  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 29453131 - 29453222
Alignment:
Q  15 gggggattttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacac 106  Q
    ||||| ||||||||||||||| ||||||||| |||||||||||||||||| || ||||||| |||||| |||||| ||||||||||||||||    
T  29453131 gggggtttttgttgagaattctcttcactggataatgactcggaaacttggtcagttgcaatctcgtgtaattgttgcgtttaacctaacac 29453222  T

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Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 29423586 - 29423489
Alignment:
Q  9 aacaatgggggattttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacac 106  Q
    ||||||||||| ||||||||||||||| ||||||||| |||||||   ||||||||||| |||| ||||||||| |||||| ||||||||||||||||    
T  29423586 aacaatgggggtttttgttgagaattctcttcactggataatgacggagaaacttgatccgttgaaacctcgtgtaattgttgcgtttaacctaacac 29423489  T

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Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 121 - 222
Target Start/End: Original strand, 18343150 - 18343251
Alignment:
Q  121 catactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagcta 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343150 catactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagcta 18343249  T
Q  221 ta 222  Q
    ||    
T  18343250 ta 18343251  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 22101579 - 22101625
Alignment:
Q  164 tgaattgagttcgtataggcattttggatgccgctattgaaatagcc 210  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  22101579 tgaattgagttcgtatagacattttggatgccgctattgaaatagcc 22101625  T

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Target: chr2 (Bit Score: 102; Significance: 9e-51; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 121 - 222
Target Start/End: Original strand, 36840925 - 36841026
Alignment:
Q  121 catactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagcta 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36840925 catactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagcta 36841024  T
Q  221 ta 222  Q
    ||    
T  36841025 ta 36841026  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 9274821 - 9274734
Alignment:
Q  21 ttttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactt 108  Q
    ||||||||||||||| |||||||||||||||||| || || |||||  ||  || ||| ||  |||||| ||||||||||||||||||    
T  9274821 ttttgttgagaattctcttcactgggtaatgactagggaaattgatgagtcacacccttgtttaattgttgcgtttaacctaacactt 9274734  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 10336147 - 10336060
Alignment:
Q  21 ttttgttgagaattcccttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactt 108  Q
    ||||||||||||||| ||||||||| ||||||||| ||||||||||  ||| |||||| ||  |||||  |||||||| ||| |||||    
T  10336147 ttttgttgagaattctcttcactggataatgactccgaaacttgatgggttacaaccttgtttaattgctgcgtttaatctatcactt 10336060  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 7115480 - 7115550
Alignment:
Q  38 ttcactgggtaatgactcggaaacttgatctgttgcaacctcgtgcaattgtcgcgtttaacctaacactt 108  Q
    |||||||| ||||| ||||||||||||||  ||  || ||| ||  |||||||||||||||||||||||||    
T  7115480 ttcactggataatgtctcggaaacttgatgagtcacacccttgtttaattgtcgcgtttaacctaacactt 7115550  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 9316342 - 9316300
Alignment:
Q  13 atgggggattttgttgagaattcccttcactgggtaatgactc 55  Q
    ||||||| ||||||| ||||||| |||||||||||||||||||    
T  9316342 atgggggtttttgttcagaattctcttcactgggtaatgactc 9316300  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 9321290 - 9321250
Alignment:
Q  13 atgggggattttgttgagaattcccttcactgggtaatgac 53  Q
    ||||||| ||||||||||||||| ||||||||| |||||||    
T  9321290 atgggggtttttgttgagaattctcttcactggataatgac 9321250  T

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Target: scaffold0002 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 164218 - 164118
Alignment:
Q  122 atactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagctat 221  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  164218 atactaaagacctatttcgatctaatgattattctgaaagaatgaattgagttcttataggcattttggatgccgctattgaaatagcctttctagctat 164119  T
Q  222 a 222  Q
    |    
T  164118 a 164118  T

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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 121 - 222
Target Start/End: Complemental strand, 18375148 - 18375047
Alignment:
Q  121 catactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagcta 220  Q
    |||| |||||| |||||||||||||||  ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  18375148 catattaaagatctatttcgttctaatagttattctcaaagaataaattgagttcgtataggcattttggatgccgctattgaaatattctttctagcta 18375049  T
Q  221 ta 222  Q
    ||    
T  18375048 ta 18375047  T

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Target: scaffold1779 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1779
Description:

Target: scaffold1779; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 524 - 457
Alignment:
Q  155 ctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagctata 222  Q
    |||||| ||||||||| |||  |||||||||||| || ||||||||||||||||||||||| ||||||    
T  524 ctgaaataatgaattgcgtttttataggcatttttgacgccgctattgaaatagcctttctggctata 457  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 46634322 - 46634426
Alignment:
Q  122 atactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtataggcattttggat-----gccgctattgaaatagcctttcta 216  Q
    ||||||||||| ||||| |||||||| ||| ||||||||||||| |||  ||| |||||||||| ||||||     || |||||||||||||| ||||||    
T  46634322 atactaaagacatatttggttctaattattcttctgaaagaatg-attaggtttgtataggcatcttggatgtcgcgctgctattgaaatagcttttcta 46634420  T
Q  217 gctata 222  Q
    ||||||    
T  46634421 gctata 46634426  T

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