View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19930_low_1 (Length: 996)
Name: NF19930_low_1
Description: NF19930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19930_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 922; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 922; E-Value: 0
Query Start/End: Original strand, 12 - 980
Target Start/End: Original strand, 43907627 - 43908595
Alignment:
| Q |
12 |
agcaaaggcaagattcatggatggatacttaatgttgtcaggagctttaaaagtaagggaaccaagcctgcatattcacatttcaaatatggctctgtca |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43907627 |
agcataggcaagattcatggatggatacttaatgttgtcaggagctttaaaagtaagggaaccaagcctgcatattcacatttcaaatatggctctgtca |
43907726 |
T |
|
| Q |
112 |
aacaataaattttcaaacatcaaaactctatgcctaggtgg-atctgtctattttcttcagtatgaactaaggaaacgaaattaaggggaaaataaccgt |
210 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43907727 |
aacaataaattttcaaacttcaaaactctatgcctaggtgggatctgtctattttcttcagtatgaactaaggaaacgaaattaaggggaaaataaccgt |
43907826 |
T |
|
| Q |
211 |
acttgcaaagatcaagccgaggccacgtgacttcagaacaatagactctgtcaggccatgataatgtataaaggattggcaaacgcatatcaggccaccc |
310 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43907827 |
acttgcaaagatcaagccgaggccaagtgacttcagaacaataaactctgtcaggccatgataatgtataaaggattggcaaacgcatatcaggccaccc |
43907926 |
T |
|
| Q |
311 |
caattgtgcaagaacagatgaatcctataaaggaaaaaataattaagtattagattaatatttaacaacattaaggattatcaaaagacagcagccaaca |
410 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43907927 |
caattgtgcaagaacagatgaatcctataaaggaaaaaataattaagtattagattaatatttaacaacattaaggattatcaaaagacggcagccaaca |
43908026 |
T |
|
| Q |
411 |
caacatagtataaggtctaaacctgtgtttcaatcattgaatgtatgattgattgtggatgaatgacaatgtcaatatcatcataatcagctccaaataa |
510 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43908027 |
caacatattataaggtctaaacctgtgtttcaatcattgaatgtatgattgattgtggatgaatgacaatgtcaatatcatcataatcagctccaaataa |
43908126 |
T |
|
| Q |
511 |
gtaatgtgcttcaatcacttctagaccctacaaaagaagtagaacaaatttactatatacttgggaaatttaaatcacataatcatacatatatcataag |
610 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43908127 |
gtaatgtgcttcaatcacttctagaccctacaaaagaagtagaacaaatttactatatacttgggaaatttaaatcacataatcatacatatatcataag |
43908226 |
T |
|
| Q |
611 |
aaagaaagaaaccttgttaaaaagtgtagcagagtccacggttatctttttccccatactccagttgggatgttttaatgcatcggcaactttaacatct |
710 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43908227 |
aaagaaagaaaccttgttaaaaagtgtagcagagtccacggttatctttttccccatactccagttgggatgttttaatgcatcggcaactttaacatct |
43908326 |
T |
|
| Q |
711 |
ttcagtttctcaacaggccaatccctattaatcatgaagcgaagcatacttacagtcatgtagatcatatagggtccacaacaaaactaagaaagggaaa |
810 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43908327 |
ttcagtttctcaacaggccaatccctattaatcatgaagcgaagcatacttacagtcatgtagatcatatagggtccacaacaaaactaagaaagggaaa |
43908426 |
T |
|
| Q |
811 |
ttcaaggttttccacgatcaatgggtttccatcatgatatgaaaaattggcagcaagcaaaattcagacatacataagaaagtttattgtatccaacata |
910 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43908427 |
ttcaaggttttccatgatcaatgggtttccatcatgatatg-aaaattggcagcaagcaaaattcagacatacataaaaaagtttattgtatccaacata |
43908525 |
T |
|
| Q |
911 |
aaaagaagcaactgaacatgggaaacaggaaaagtgctgccactcaggtttattttacatacctaaaagc |
980 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43908526 |
aaaagaagcaactgaacatgggaaacaggaaaagtgctgccactcaggtttattttacatacctaaaagc |
43908595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 8e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 428 - 539
Target Start/End: Complemental strand, 3634301 - 3634190
Alignment:
| Q |
428 |
taaacctgtgtttcaatcattgaatgtatgattgattgtggatgaatgacaatgtcaatatcatcataatcagctccaaataagtaatgtgcttcaatca |
527 |
Q |
| |
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|||||||||||||||| | |||||||||||| |||||||||||||| ||||| |||||||||||||| || |||||||| ||||||||||||||||| | |
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| T |
3634301 |
taaacctgtgtttcaactaatgaatgtatgatagattgtggatgaataacaatctcaatatcatcatattctgctccaaacaagtaatgtgcttcaatta |
3634202 |
T |
|
| Q |
528 |
cttctagaccct |
539 |
Q |
| |
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|||||| ||||| |
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| T |
3634201 |
cttctaaaccct |
3634190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 209 - 336
Target Start/End: Complemental strand, 3634527 - 3634400
Alignment:
| Q |
209 |
gtacttgcaaagatcaagccgaggccacgtgacttcagaacaatagactctgtcaggccatgataatgtataaaggattggcaaacgcatatcaggccac |
308 |
Q |
| |
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||||||| ||||||||| |||||||| || | |||||||||||||||||| || |||||||| || |||||||||| |||||| ||||| ||||| | |
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| T |
3634527 |
gtacttggtaagatcaaggcgaggccaagtaatttcagaacaatagactctttctggccatgacaaagtataaaggagtggcaaccgcatgtcaggtaat |
3634428 |
T |
|
| Q |
309 |
cccaattgtgcaagaacagatgaatcct |
336 |
Q |
| |
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||||| ||||||| |||||| ||||||| |
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|
| T |
3634427 |
cccaactgtgcaataacagaagaatcct |
3634400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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