View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19930_low_11 (Length: 444)
Name: NF19930_low_11
Description: NF19930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19930_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 85 - 433
Target Start/End: Original strand, 34259877 - 34260225
Alignment:
| Q |
85 |
tttccatttgcatgagagtggtggcatcagtactagaatcagaattagaaaccaaagtgatcaagaaatcaaaaatatcagtggctataacagcagaagc |
184 |
Q |
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| T |
34259877 |
tttccatttgcatgagagtggtggcatcagtactagaatcagaattagaaaccaaagtgatcaaaaaatcaaaaatatcagtagctataacagcagaagc |
34259976 |
T |
|
| Q |
185 |
aacatcttctttattcaaagttcttcttttagcatcaatagccataatccaagaccttcttgtaagttcttcaatgaaaagttcacaagcttttgagaaa |
284 |
Q |
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| T |
34259977 |
aacatcttctttattcaaagttcttcttttagcatcaatagccataatccaagaccttcttgtaagttcttcaatgaaaagttcacaagcttttgagaaa |
34260076 |
T |
|
| Q |
285 |
acaattggagcaactcctgatatcattttcacgtcttcactagaattcttcattatcttctttattcttgctaatggtaatgaatgtggacctgttcttc |
384 |
Q |
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| T |
34260077 |
acaattggagcaacccctgatatcattttcacgtcttcactagaattcttcattatcttctttattcttgctaatggtaatgaatgtggacctgttcttc |
34260176 |
T |
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| Q |
385 |
ctatgccaccatttagtatacctgaatatgcacctgcttgtctcatatt |
433 |
Q |
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| T |
34260177 |
ctatgccaccatttactatacctgaatatgcacctgcttgtctcatatt |
34260225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 17 - 433
Target Start/End: Original strand, 34243282 - 34243693
Alignment:
| Q |
17 |
aattagaagtgttggtgttacattgtatatgttgtagcataaaccttataattaacaagaattcgtagtttccatttgcatgagagtggtggcatcagta |
116 |
Q |
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| T |
34243282 |
aattagaagtgacgatgttacattatatatgttgcagcataaacccta--attaagaagaattcatagtttccatttgcatgacagtggtatcatcagtg |
34243379 |
T |
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| Q |
117 |
ctagaatcagaattagaaaccaaagtgatcaagaaatcaaaaatatcagtggctataacagcagaagcaacatcttctttattcaaagttcttcttttag |
216 |
Q |
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| T |
34243380 |
---gaatcagaattagaaaccaaagtgatcaaaaaatcaaaaatatcagtagctataacagcagaagcaacatcttctttattcaaagttcttcttttag |
34243476 |
T |
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| Q |
217 |
catcaatagccataatccaagaccttcttgtaagttcttcaatgaaaagttcacaagcttttgagaaaacaattggagcaactcctgatatcattttcac |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
34243477 |
catcaatagccataatccaagaccttcttgtaagttcttcaatgaaaagttcacaagcttttgagaaaacaattggagctacacctgatatcattttcac |
34243576 |
T |
|
| Q |
317 |
gtcttcactagaattcttcattatcttctttattcttgctaatggtaatgaatgtggacctgttcttcctatgccaccatttagtatacctgaatatgca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34243577 |
gtcttcactagaattcttcattatcttctttattcttgctaatggtaatgaatgtggacctgttcttcctatgccaccatttagtatacctgaatatgca |
34243676 |
T |
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| Q |
417 |
cctgcttgtctcatatt |
433 |
Q |
| |
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||||||||||||||||| |
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| T |
34243677 |
cctgcttgtctcatatt |
34243693 |
T |
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