View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19930_low_13 (Length: 422)
Name: NF19930_low_13
Description: NF19930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19930_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 404
Target Start/End: Original strand, 45126876 - 45127272
Alignment:
| Q |
16 |
ataggaaacaatatattaaattgttattttattgaaagtataacaaattagaccttnnnnnnnnggaagagcatgcttcttctgttctaattattagttc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||| |
|
|
| T |
45126876 |
ataggaaacaatatattaaattgttattttattgaaagtataacaaattagaccttaaaaaaa-ggaagagcatgcttcttcagttcgaattattagtga |
45126974 |
T |
|
| Q |
116 |
aaattaaatgannnnnnnnnn--ggtcaagaaattaaatgattaccattaccatatatattgttttgttttttcttccttnnnnnnnnnnt-----tgtg |
208 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
45126975 |
aaattaaatgattttttttttttggtaaagaaattaaatgattaccattaccatatatattgttttgttttttcttccttaaaaataaaataaaattgtg |
45127074 |
T |
|
| Q |
209 |
aaattaatctttcctatgcagtaggcagagttagtgctcattcaaactgtttccaacaca--ttgttttaaacgtgatcatgaaaatataaatgcagaca |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| ||||||| |||| |
|
|
| T |
45127075 |
aaattaatctttcctatgcagtaggcagagttagtgctcattcaaactgtttccaacacaaatcgttttgaacgtgatcatgaaaatgtaaatgctgaca |
45127174 |
T |
|
| Q |
307 |
atatttattatggaaagcattgaggatatcataagccacaacaataattttggatgtcgtgcnnnnnnntttctttcctatgcatctgtgcctatttt |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||| |
|
|
| T |
45127175 |
atatttattatggaaagcattgaggatatcataagccacaacaataattttggatgttgtgcaaaaaaatttctttcctatgcatctgtgcatatttt |
45127272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 273 - 404
Target Start/End: Complemental strand, 29394120 - 29393989
Alignment:
| Q |
273 |
tttaaacgtgatcatgaaaatataaatgcagacaatatttattatggaaagcattgaggatatcataagccacaacaataattttggatgtcgtgcnnnn |
372 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||| ||||| |
|
|
| T |
29394120 |
tttaaacgtgatcaagaaaatagtgatgcagacaatatttattatggaaagcattagggatatcagaagccacaacaatacttttggccagcgtgcagaa |
29394021 |
T |
|
| Q |
373 |
nnntttctttcctatgcatctgtgcctatttt |
404 |
Q |
| |
|
| ||||||||||||||||||||||||||| |
|
|
| T |
29394020 |
aattgtctttcctatgcatctgtgcctatttt |
29393989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 29394713 - 29394658
Alignment:
| Q |
16 |
ataggaaacaatatattaaattgttattttattgaaagtataacaaattagacctt |
71 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| |
|
|
| T |
29394713 |
ataggaaacaatatattaaattgttattttaataaaagtataataaattagacctt |
29394658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 193
Target Start/End: Complemental strand, 29394609 - 29394576
Alignment:
| Q |
160 |
attaccatatatattgttttgttttttcttcctt |
193 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
29394609 |
attaccatatatattgttttggtttttcttcctt |
29394576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 193
Target Start/End: Original strand, 45126787 - 45126820
Alignment:
| Q |
160 |
attaccatatatattgttttgttttttcttcctt |
193 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
45126787 |
attatcatatatattgttttgttttttcttcctt |
45126820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 18992599 - 18992702
Alignment:
| Q |
17 |
taggaaacaatatattaaattgttattttattgaaagtataacaaattagaccttnnnnnnnnggaagagcatgcttcttctgttctaattattagttca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| | |
|
|
| T |
18992599 |
taggaaacaatatattaaattgttattttattgaaagtataacaaattagacctt-aaaaaaaggaagagcatgcttctt-agttctaattattagtgga |
18992696 |
T |
|
| Q |
117 |
aattaa |
122 |
Q |
| |
|
|||||| |
|
|
| T |
18992697 |
aattaa |
18992702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 193
Target Start/End: Original strand, 18992510 - 18992542
Alignment:
| Q |
161 |
ttaccatatatattgttttgttttttcttcctt |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
18992510 |
ttaccatatatattgttttgttttttcttcctt |
18992542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University