View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19930_low_14 (Length: 421)
Name: NF19930_low_14
Description: NF19930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19930_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 3517324 - 3517440
Alignment:
| Q |
18 |
ttaaggactaaaattcaacttaaagatatcacaatggaaaatctctaattaaagacaccgtcaatttggtgcctccaatactcaataaaagaatgtacaa |
117 |
Q |
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| T |
3517324 |
ttaaggactaaaattcaacttaaagatatcacaatggaaaaactctaattaaagacactgtcaatttggtgcctccaatactcaataaaagaatgtacaa |
3517423 |
T |
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| Q |
118 |
aggttaatataaaaagg |
134 |
Q |
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| T |
3517424 |
aggttaatataaaaagg |
3517440 |
T |
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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 3519188 - 3519262
Alignment:
| Q |
77 |
gtcaatttggtgcctccaatactcaataaaagaatgtacaaaggttaatataaaaaggacatcgtacataggaaga |
152 |
Q |
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| T |
3519188 |
gtcaatttggtgcatccaatactca-taaaaaactgtacaaaggttaacataaaaaaggcatagtacataggaaga |
3519262 |
T |
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