View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19930_low_16 (Length: 408)
Name: NF19930_low_16
Description: NF19930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19930_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 266 - 391
Target Start/End: Original strand, 14319158 - 14319283
Alignment:
| Q |
266 |
aatatttcttcatcctataaattagaacaatgactttgtaagcacaataactaataagcattctcaggaaaatcaaaattggagattcaacaaagaaaac |
365 |
Q |
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| T |
14319158 |
aatatttcttcatcctataaattagaacaatgactttgtaagcacaataactaataagcattctcaggaaaatcaaaattggagattcaacaaagaaaac |
14319257 |
T |
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| Q |
366 |
cttcataaatggcattcagaacatgg |
391 |
Q |
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| T |
14319258 |
cttcataattggcattcagaacatgg |
14319283 |
T |
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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 345
Target Start/End: Complemental strand, 5469145 - 5469067
Alignment:
| Q |
265 |
aaatatttcttcatcctataaattagaacaatgactttgtaagcacaataactaataagcattctcaggaaaatcaaaatt |
345 |
Q |
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| T |
5469145 |
aaatatttctttatactataaagcaaaacaatgactttgtaagcacaataacta--aagcattctgagaaaaatcaaaatt |
5469067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 313
Target Start/End: Original strand, 26580424 - 26580463
Alignment:
| Q |
274 |
ttcatcctataaattagaacaatgactttgtaagcacaat |
313 |
Q |
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| T |
26580424 |
ttcatcctataaaatagaacagtgactttgtaagcacaat |
26580463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 38572145 - 38572181
Alignment:
| Q |
291 |
aacaatgactttgtaagcacaataactaataagcatt |
327 |
Q |
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| T |
38572145 |
aacagtgactttgtaagtacaataactaataagcatt |
38572181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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