View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19930_low_18 (Length: 376)
Name: NF19930_low_18
Description: NF19930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19930_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 14 - 345
Target Start/End: Complemental strand, 11111429 - 11111098
Alignment:
| Q |
14 |
ataattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagaagttcttgtccaatgtatcaggagtcgttgggtcgaaattgacacg |
113 |
Q |
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| T |
11111429 |
ataattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagaagttcttgtccaatgtatcaggagtcgttgggtcgaaattaacacg |
11111330 |
T |
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| Q |
114 |
gttatttccagttccattctgagggcattggtttcgcaattgttgtaagtatgttttatcaagagttggatcgggtttgccagtattgttgaagttgtat |
213 |
Q |
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| T |
11111329 |
gttatttccagttccattctgagggcattggtttcgcaactgttgtaagtatgttgtatcaagagttggatcgggtttgccagtattgttgaagttgtat |
11111230 |
T |
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| Q |
214 |
aatcgatcaaggatgaaaaggcaacgtgctctcccaaatgtatgagcacctgaagttgaagtagtttagttaaggagaacatatttaaagacgtggcaac |
313 |
Q |
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| T |
11111229 |
aatcgatcaaggatgaaaaggcaacgtgctctcccaaatgtatgagcacctgaagttgaagtagtttagttaaggagatcatatttaaagacgtggcaac |
11111130 |
T |
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| Q |
314 |
ataactgttttacgagaaagtgtttgtaatca |
345 |
Q |
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| T |
11111129 |
ataactgttttacgagaaagtgtttgtaatca |
11111098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 16 - 265
Target Start/End: Original strand, 10793367 - 10793616
Alignment:
| Q |
16 |
aattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagaagttcttgtccaatgtatcaggagtcgttgggtcgaaattgacacggt |
115 |
Q |
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| T |
10793367 |
aattcttggtcactttgaagcaaaccctttttaacctgaagattgttgtagaagttcttgtccaatgtatcaggagtagttgggtcgaaatttacacggt |
10793466 |
T |
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| Q |
116 |
tatttccagttccattctgagggcattggtttcgcaattgttgtaagtatgttttatcaagagttggatcgggtttgccagtattgttgaagttgtataa |
215 |
Q |
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| T |
10793467 |
tatttccaggtccattttgaggacattcgttttgcaattgttttaagtacgttgtatcaagagttggatcaggttcgccagtattgctgaagttgtataa |
10793566 |
T |
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| Q |
216 |
tcgatcaaggatgaaaaggcaacgtgctctcccaaatgtatgagcacctg |
265 |
Q |
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| T |
10793567 |
tcgatcaacgaataaagaacaacgtgctctcccaaatgtgtgtgcacctg |
10793616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 16 - 273
Target Start/End: Complemental strand, 11119198 - 11118941
Alignment:
| Q |
16 |
aattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagaagttcttgtccaatgtatcaggagtcgttgggtcgaaattgacacggt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||| ||||| ||||| || ||||||||| || |
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| T |
11119198 |
aattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtcgaatttatcgggagttgttggatcaaaattgacaacgt |
11119099 |
T |
|
| Q |
116 |
tatttccagttccattctgagggcattggtttcgcaattgttgtaagtatgttttatcaagagttggatcgggtttgccagtattgttgaagttgtataa |
215 |
Q |
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| T |
11119098 |
tatttccaggtccattttgaggacattgtttttgcaactgttttaagtatgttgggtcaagagttggatcaggtttgccagtattgtcgaagtcgtataa |
11118999 |
T |
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| Q |
216 |
tcgatcaaggatgaaaaggcaacgtgctctcccaaatgtatgagcacctgaagttgaa |
273 |
Q |
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| T |
11118998 |
tcgatcaagtatgaaaagacaacgtgctcttcctaatgtatgggcacctgaaattgaa |
11118941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 11137734 - 11137489
Alignment:
| Q |
19 |
tcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagaagttcttgtccaatgtatcaggagtcgttgggtcgaaattgacacggttat |
118 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||| |||| |||||||||| ||| ||||||||||||||||||| |||||| | |||||| |
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| T |
11137734 |
tcttggtcactctgaagcaaaccctttttaccctgaagattggagtagtagttcttgtcaaatttatcaggagtcgttgggtcaaaattggcgaggttat |
11137635 |
T |
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| Q |
119 |
ttccagttccattctgagggcattggtttcgcaattgttgtaagtatgttttatcaagagttggatcgggtttgccagtattgttgaagttgtataatcg |
218 |
Q |
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| T |
11137634 |
ttggtggtccaccattaggacatattttacgtaattcttgtaaataagttgtattaagagttggatcaggttttcctgtactgctgaagttgtataatcg |
11137535 |
T |
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| Q |
219 |
atcaaggatgaaaaggcaacgtgctctcccaaatgtatgagcacct |
264 |
Q |
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| T |
11137534 |
atcagtgatgaaagtgcaacgtgctcttccgaatgtatgagcacct |
11137489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 11150008 - 11149919
Alignment:
| Q |
19 |
tcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagaagttcttgtccaatgtatcaggagtcgttgggtcgaaattg |
108 |
Q |
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||||| |||||||| |||||||||||||| |||||||||| ||| |||||||||| ||| |||||||||||||||| ||||||||| |
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| T |
11150008 |
tcttgatcactttggagcaaaccctttttcacttgaagattagagtaatagttcttgtcaaatttatcaggagtcgttggatcgaaattg |
11149919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 11156676 - 11156587
Alignment:
| Q |
19 |
tcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagaagttcttgtccaatgtatcaggagtcgttgggtcgaaattg |
108 |
Q |
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| T |
11156676 |
tcttgatcactttggagcaagccctttttcacttgaagattggagtaatagttcttgtcaaatttatcaggagtcgttggatcgaaattg |
11156587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 11172759 - 11172711
Alignment:
| Q |
175 |
agagttggatcgggtttgccagtattgttgaagttgtataatcgatcaa |
223 |
Q |
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|||||||||||||| || ||||||||| |||| |||||||||||||||| |
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| T |
11172759 |
agagttggatcgggatttccagtattgctgaaattgtataatcgatcaa |
11172711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 11146039 - 11145960
Alignment:
| Q |
19 |
tcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagaagttcttgtccaatgtatcaggagtcgttgg |
98 |
Q |
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| T |
11146039 |
tcttgatcactttgaagcaaaccttttttcacttgaagattagagtaatagttcttgtcaaatttatcaggagtagttgg |
11145960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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