View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19930_low_19 (Length: 364)
Name: NF19930_low_19
Description: NF19930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19930_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 4e-94; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 163 - 353
Target Start/End: Original strand, 38153883 - 38154073
Alignment:
| Q |
163 |
cttacatagccaatcattcacacgaaagtgctcattcaaggaccattttgtcaagtttttaccagggatccatccttgccttccccctccaacaaaatgc |
262 |
Q |
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| T |
38153883 |
cttacataaccaatcattcacacgaaagtgctcattcaaggaccattttgtcaagttattaccagggatccatctttgctttccccctccaacaaaatgc |
38153982 |
T |
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| Q |
263 |
tcctcagcttttgccatgttccacatcatagccgtcataatcatcattaacaacattgttttgttaaacctaaaaacctccattttttctt |
353 |
Q |
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| T |
38153983 |
tcctcagcttttgccatgttccacatcatagccgtcataatcatcattaacaacattgttttgttaaacctaaaaacctccattttttctt |
38154073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 163 - 346
Target Start/End: Original strand, 38159945 - 38160128
Alignment:
| Q |
163 |
cttacatagccaatcattcacacgaaagtgctcattcaaggaccattttgtcaagtttttaccagggatccatccttgccttccccctccaacaaaatgc |
262 |
Q |
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| T |
38159945 |
cttacatagccaatcattcacatgaaagtgctcattcaaggaccattttgtcaagttattactagggttccatccttgccttccccctccaacaaaatgc |
38160044 |
T |
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| Q |
263 |
tcctcagcttttgccatgttccacatcatagccgtcataatcatcattaacaacattgttttgttaaacctaaaaacctccatt |
346 |
Q |
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| T |
38160045 |
tcctcagcttttgccatgttccaaatcatagccgtcataatcatcatcaacaacatttttttgttcaagctcaaagcctccatt |
38160128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 271 - 350
Target Start/End: Original strand, 38223330 - 38223409
Alignment:
| Q |
271 |
ttttgccatgttccacatcatagccgtcataatcatcattaacaacattgttttgttaaacctaaaaacctccatttttt |
350 |
Q |
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| T |
38223330 |
ttttgccatgctccacatcatagccatcataatcatcttcaacaacatgtttttgtttaagctcaaaacctccatttttt |
38223409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 271 - 350
Target Start/End: Original strand, 38229742 - 38229821
Alignment:
| Q |
271 |
ttttgccatgttccacatcatagccgtcataatcatcattaacaacattgttttgttaaacctaaaaacctccatttttt |
350 |
Q |
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|||||||||| |||||||||||||| ||||||||||| | |||||||| ||||||| || || |||||||||||||||| |
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| T |
38229742 |
ttttgccatgctccacatcatagccatcataatcatcttcaacaacatgtttttgtttaagctcaaaacctccatttttt |
38229821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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