View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19930_low_21 (Length: 332)
Name: NF19930_low_21
Description: NF19930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19930_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 49985623 - 49985311
Alignment:
| Q |
1 |
tttttggcctaacgcctacaaaatttgcagtcacacattcatcgttagaaccaacttcacttttctgaatctgaagtctcactatcaacataatctgtgt |
100 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49985623 |
ttttgggcctaatgcctacaaaatttgcagtcacacattcatcgttagaaccaacttcacttttctgaatctgaagtctcactatcaacataatctgtgt |
49985524 |
T |
|
| Q |
101 |
ctactacctctgactgtttcacaaaaccaaaactgaaaaagaaactttcagcgcttaaaacctctttccaaaacccttaatcactcatacactaattcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
49985523 |
ctactacctctgactgtttcacaaaaccaaaactgaaaaagaaactttcagcgcttaaaacctctttccaaaacccttaatcactcatgcactaattcaa |
49985424 |
T |
|
| Q |
201 |
aaataattcatacccaaccgttttccaaaaccccaatttcaaaacaagttatttttaacgaaagtnnnnnnnnncactgaatacaaaaaaggttcagaga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
49985423 |
aaataattcatacccaaccgttttccaaaaccccaatttcaaaacaagttatttttaacaaaagt-aaaaaaaacactgaatacaaaaaaggttcagaga |
49985325 |
T |
|
| Q |
301 |
aaatagacaaacat |
314 |
Q |
| |
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|||||||||||||| |
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| T |
49985324 |
aaatagacaaacat |
49985311 |
T |
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