View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19930_low_24 (Length: 296)
Name: NF19930_low_24
Description: NF19930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19930_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 41297439 - 41297167
Alignment:
| Q |
18 |
cttgacttggtctttcattaccttcacaagggaaaacacatcttaaagatgaatcatcaacttgttgccactgatgatgtgaagatgaatcatgatgaac |
117 |
Q |
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| T |
41297439 |
cttgacttggtctttcattaccttcacaagggaaaacacatcttaaagatgaatcatcaacttgttgccactgatgatgtgaagatgaatcatgatgaac |
41297340 |
T |
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| Q |
118 |
catgttgtttagattctgatcactacttgttgtatcagaaacagtgaaatcttgatgatgatgatagaaattatcattcatggtttttgaagaagaggaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41297339 |
catgttgtttagattctgatcactacttgttgtatcagaaacagtgaaatcttgatga---tgatagaaattatcattcatggtttttgaagaagaggaa |
41297243 |
T |
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| Q |
218 |
ggaccaacatgttgttgacttagttttcctgagaaatttgttttccacatgacagagtttgttgtgtcagtactat |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41297242 |
ggaccaacatgttgttgacttagttttcctgagaaatttgttttccacatgacagagtttgttgtgtcagtactat |
41297167 |
T |
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