View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19930_low_29 (Length: 272)
Name: NF19930_low_29
Description: NF19930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19930_low_29 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 14 - 272
Target Start/End: Original strand, 39295669 - 39295927
Alignment:
| Q |
14 |
agacagagaaagcaggaacatggctttggattcctccatggacaagaaacaattctcaagctattagttcaactaggactcaaagtcgagctagtagtca |
113 |
Q |
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| T |
39295669 |
agacagagaaagcaggaacatggctttggattcctccatggacaagaaacaattctcaagctattagttcaactaggactcaaagtcgagctagtagtca |
39295768 |
T |
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| Q |
114 |
cttctgtgacatcaacattgatgctgacgatgatgagtatgaatttctagctgaaattcaggacatggaaaataaccaagagagagttgaggtactacca |
213 |
Q |
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| T |
39295769 |
cttctgtgacatcaacattgatgctgacgatgatgagtatgaatttctagctcaagttcaggacatggaaaataaccaagagaaagttgaggtactacca |
39295868 |
T |
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| Q |
214 |
aagtctgacataccaacaaaaaatttgaggttgtcgattattctgctggatcaaggttg |
272 |
Q |
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| T |
39295869 |
aagtctgacataccaacaaaaaattcgaggttgtcgattattctgctggatcaaggttg |
39295927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 97 - 215
Target Start/End: Original strand, 39288869 - 39288987
Alignment:
| Q |
97 |
agtcgagctagtagtcacttctgtgacatcaacattgatgctgacgatgatgagtatgaatttctagctgaaattcaggacatggaaaataaccaagaga |
196 |
Q |
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| T |
39288869 |
agtcgagcaagtagtcatttttgtgacatcaacattgatgctgatgatgttgagtatgaatttctagctgaagttcaagacatagaaaataaccaagaaa |
39288968 |
T |
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| Q |
197 |
gagttgaggtactaccaaa |
215 |
Q |
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| T |
39288969 |
aagttaaggtactaccaaa |
39288987 |
T |
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