View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19930_low_3 (Length: 636)
Name: NF19930_low_3
Description: NF19930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19930_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 371 - 623
Target Start/End: Original strand, 33600018 - 33600270
Alignment:
| Q |
371 |
gaaatgcgtctaggtgctcacgagcagaaattgactcgcggtagcattgattgaactaatcaaagactgaatttttaagagaaattcagatacagaattc |
470 |
Q |
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| T |
33600018 |
gaaatacgtctaggtgctcacgagcagaaattgactctcggtagcattgattgaactaatcaaagactgaatttttaagagaaattcagatacagaattc |
33600117 |
T |
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| Q |
471 |
ttccaggtttcaagcacggtgcttcacaaatcagaacaaagctggcagagtttggcatgactatgttgctgaaagtatgcatgaactttatcccaaagta |
570 |
Q |
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| T |
33600118 |
ttctaggtttcaagcacggtgcttcacaaatcagaacaaagctggcagagtttggcatgactatgttgctgaaagtatgcatgaactttatcccaaagta |
33600217 |
T |
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| Q |
571 |
tttaagagtgctttcacccagtaatacacataagcatctccttcttgatagta |
623 |
Q |
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| T |
33600218 |
tttaagagtgctttcacccagtaatacacataagcatctccttcttgatagta |
33600270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 59 - 200
Target Start/End: Complemental strand, 33579693 - 33579549
Alignment:
| Q |
59 |
ctaaatcatgatccaacgcccttcctttcagatatctcaaaactagcttgactgcaattgagtgactctgcagggtttgagccacaaactggcacacttt |
158 |
Q |
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| T |
33579693 |
ctaaatcatgatccagagccattgctttcagatatttcatagttatctttcgtgcaattgagtgattctgcagggtttgagacacaaactggcacacttt |
33579594 |
T |
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| Q |
159 |
att---aacatatcgaacttttagtttagttatggtcatatactg |
200 |
Q |
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| T |
33579593 |
attaacaacatatccaatttctagtctagttatggtcacatactg |
33579549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 59 - 339
Target Start/End: Original strand, 10542885 - 10543164
Alignment:
| Q |
59 |
ctaaatcatgatccaacgcccttcctttcagatatctcaaaactagcttgactgcaattgagtgactctgcagggtttgagccacaaactggcacacttt |
158 |
Q |
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| T |
10542885 |
ctaaatcatgattcagagcccttcctta-agatatctcaaaattagcttgacagcaattcagtgactctgcagggtttgagccacaaattggcacacttt |
10542983 |
T |
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| Q |
159 |
attaac---atatcgaacttttagtttagttatggtcatatactgttgtgcttgaactatggacctccaggtggctagaatatctatgtactc--tgaaa |
253 |
Q |
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| T |
10542984 |
a-taacagtatatccaatttctagtctagtaatggtcacatactgtggtgcattaactatggacctgcaggtggctaaatcttctatgtactcaaagcaa |
10543082 |
T |
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| Q |
254 |
actgagacgacttaggattcctnnnnnnnnggaagagaaaccaatggtagaggccatggctgctattttagagcaaagacaacatt |
339 |
Q |
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| T |
10543083 |
actgagatgacttaggattcgtaggaaaaagttagagataccattggtagaggcc----ctgctattttagagcaaagacaacatt |
10543164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 9082650 - 9082557
Alignment:
| Q |
59 |
ctaaatcatgatccaacgcccttcctttcagatatctcaaaactagcttgactgcaattgagtgactctgcagggtttgagccacaaactggca |
152 |
Q |
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| T |
9082650 |
ctaaaccatgatccagagcctttcctttgagatatcacaaaattcactttactgcaatagagtaactctacaggggttgagccacaaaccggca |
9082557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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