View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19930_low_30 (Length: 263)

Name: NF19930_low_30
Description: NF19930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19930_low_30
NF19930_low_30
[»] chr8 (2 HSPs)
chr8 (1-256)||(43290521-43290778)
chr8 (234-263)||(40413248-40413277)
[»] chr7 (5 HSPs)
chr7 (234-263)||(155866-155895)
chr7 (234-263)||(43657159-43657188)
chr7 (235-263)||(29355489-29355517)
chr7 (235-263)||(30982252-30982280)
chr7 (235-263)||(42663241-42663269)
[»] chr5 (1 HSPs)
chr5 (234-263)||(11767875-11767904)
[»] chr4 (2 HSPs)
chr4 (234-263)||(31240806-31240835)
chr4 (235-263)||(11063975-11064003)
[»] scaffold0001 (1 HSPs)
scaffold0001 (235-263)||(396019-396047)
[»] chr3 (2 HSPs)
chr3 (235-263)||(20380775-20380803)
chr3 (235-263)||(51464152-51464180)
[»] chr2 (1 HSPs)
chr2 (235-263)||(28244243-28244271)
[»] chr1 (1 HSPs)
chr1 (235-263)||(28716300-28716328)


Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 43290521 - 43290778
Alignment:
Q  1 agaagggcagctagaaagatataaaagaaggaacgtggggcttatatgtattgtgacccccacacgaatggctaccacattatgcatactagtagtacat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  43290521 agaagggcagctagaaagatataaaagaaggaacgtggggcttatatgtattgtgacccccacacgaatggctaccacattatgcatattactagtacat 43290620  T
Q  101 gaacatctactatgatctatcaaatatttatttcaactccccaaaatagaaaaataaaacaaacatattttgttttatactttaaaaagtatgcacatct 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43290621 gcacatctactatgatctatcaaatatttatttcaactccccaaaatagaaaaataaaacaaacatattttgttttatactttaaaaagtatgcacatct 43290720  T
Q  201 acttttatttatttaggtgtgattagatctaactt--aagagtagtgatatttgaaca 256  Q
    |||||||||||||||| ||||||||||||||||||  |||||||||||||||| ||||    
T  43290721 acttttatttatttagatgtgattagatctaacttaaaagagtagtgatatttaaaca 43290778  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 263
Target Start/End: Original strand, 40413248 - 40413277
Alignment:
Q  234 ttaagagtagtgatatttgaacaaccattt 263  Q
    ||||||||||||||||||||||||||||||    
T  40413248 ttaagagtagtgatatttgaacaaccattt 40413277  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 263
Target Start/End: Original strand, 155866 - 155895
Alignment:
Q  234 ttaagagtagtgatatttgaacaaccattt 263  Q
    ||||||||||||||||||||||||||||||    
T  155866 ttaagagtagtgatatttgaacaaccattt 155895  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 263
Target Start/End: Complemental strand, 43657188 - 43657159
Alignment:
Q  234 ttaagagtagtgatatttgaacaaccattt 263  Q
    ||||||||||||||||||||||||||||||    
T  43657188 ttaagagtagtgatatttgaacaaccattt 43657159  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 263
Target Start/End: Complemental strand, 29355517 - 29355489
Alignment:
Q  235 taagagtagtgatatttgaacaaccattt 263  Q
    |||||||||||||||||||||||||||||    
T  29355517 taagagtagtgatatttgaacaaccattt 29355489  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 263
Target Start/End: Original strand, 30982252 - 30982280
Alignment:
Q  235 taagagtagtgatatttgaacaaccattt 263  Q
    |||||||||||||||||||||||||||||    
T  30982252 taagagtagtgatatttgaacaaccattt 30982280  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 263
Target Start/End: Complemental strand, 42663269 - 42663241
Alignment:
Q  235 taagagtagtgatatttgaacaaccattt 263  Q
    |||||||||||||||||||||||||||||    
T  42663269 taagagtagtgatatttgaacaaccattt 42663241  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 263
Target Start/End: Original strand, 11767875 - 11767904
Alignment:
Q  234 ttaagagtagtgatatttgaacaaccattt 263  Q
    ||||||||||||||||||||||||||||||    
T  11767875 ttaagagtagtgatatttgaacaaccattt 11767904  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 263
Target Start/End: Complemental strand, 31240835 - 31240806
Alignment:
Q  234 ttaagagtagtgatatttgaacaaccattt 263  Q
    ||||||||||||||||||||||||||||||    
T  31240835 ttaagagtagtgatatttgaacaaccattt 31240806  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 263
Target Start/End: Original strand, 11063975 - 11064003
Alignment:
Q  235 taagagtagtgatatttgaacaaccattt 263  Q
    |||||||||||||||||||||||||||||    
T  11063975 taagagtagtgatatttgaacaaccattt 11064003  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 263
Target Start/End: Complemental strand, 396047 - 396019
Alignment:
Q  235 taagagtagtgatatttgaacaaccattt 263  Q
    |||||||||||||||||||||||||||||    
T  396047 taagagtagtgatatttgaacaaccattt 396019  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 263
Target Start/End: Original strand, 20380775 - 20380803
Alignment:
Q  235 taagagtagtgatatttgaacaaccattt 263  Q
    |||||||||||||||||||||||||||||    
T  20380775 taagagtagtgatatttgaacaaccattt 20380803  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 263
Target Start/End: Original strand, 51464152 - 51464180
Alignment:
Q  235 taagagtagtgatatttgaacaaccattt 263  Q
    |||||||||||||||||||||||||||||    
T  51464152 taagagtagtgatatttgaacaaccattt 51464180  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 263
Target Start/End: Original strand, 28244243 - 28244271
Alignment:
Q  235 taagagtagtgatatttgaacaaccattt 263  Q
    |||||||||||||||||||||||||||||    
T  28244243 taagagtagtgatatttgaacaaccattt 28244271  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 263
Target Start/End: Complemental strand, 28716328 - 28716300
Alignment:
Q  235 taagagtagtgatatttgaacaaccattt 263  Q
    |||||||||||||||||||||||||||||    
T  28716328 taagagtagtgatatttgaacaaccattt 28716300  T

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