View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19930_low_34 (Length: 250)
Name: NF19930_low_34
Description: NF19930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19930_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 15 - 247
Target Start/End: Original strand, 42173934 - 42174166
Alignment:
| Q |
15 |
tatggatgaaacttgtactagaagatttggagatacaatatgaaggccctattaagttgttttaacaatatcagtattgctcataatcatgttcatcgtg |
114 |
Q |
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| T |
42173934 |
tatggatgaaacttgtactagaagatttggagatacaatatgaaggccctattaagttgttttaacaatatcagtattgctcataatcatgttcatcgtg |
42174033 |
T |
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| Q |
115 |
acatgacaaacacattgagatagaccaacatttcgttaaagagaaactagatagtatattggtaacttcaaccttcattccttatgtgaatcagctgata |
214 |
Q |
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| T |
42174034 |
acatgacaaacacgttgagatagaccaacatttcgttaaagagaaactagatagtatattggtaacttcaacctacattccttatgtgaatccgctgata |
42174133 |
T |
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| Q |
215 |
aatgtgttaacaaatggtttacaaaatgaatga |
247 |
Q |
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| T |
42174134 |
aatgtgttaacaaatggtttacaaaatgaatga |
42174166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 197
Target Start/End: Original strand, 4464629 - 4464742
Alignment:
| Q |
84 |
atcagtattgctcataatcatgttcatcgtgacatgacaaacacattgagatagaccaacatttcgttaaagagaaactagatagtatattggtaacttc |
183 |
Q |
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| T |
4464629 |
atcagtattgctcataaccgtgtttagtatgacaggacgaaaacattgagatagaccgacatttcattaaagagaatctatatagtttattgatagctac |
4464728 |
T |
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| Q |
184 |
aaccttcattcctt |
197 |
Q |
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| T |
4464729 |
aacctatattcctt |
4464742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 27906330 - 27906270
Alignment:
| Q |
17 |
tggatgaaacttgtactagaagatttggagatacaatatgaaggccctattaagttgtttt |
77 |
Q |
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| T |
27906330 |
tggatgaaactagtactagaagatttgaagatacgatgtgaaggctctatgaagttgtttt |
27906270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 29402630 - 29402692
Alignment:
| Q |
15 |
tatggatgaaacttgtactagaagatttggagatacaatatgaaggccctattaagttgtttt |
77 |
Q |
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|||||| |||| || | ||||||| |||||| ||||| | ||||||||||||||||||||||| |
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| T |
29402630 |
tatggacgaaaattatgctagaagttttggaaatacagtgtgaaggccctattaagttgtttt |
29402692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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