View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19930_low_36 (Length: 238)
Name: NF19930_low_36
Description: NF19930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19930_low_36 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 5527483 - 5527247
Alignment:
| Q |
18 |
atctcctaacacatgctattaggatcgaacaccgagtaactacttaagagatttaactatttactaaccg----------cattggtcgaataaattcaa |
107 |
Q |
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| T |
5527483 |
atctcctaacacatgctattaggatcgaacaccgagtaactacttaagagatttaactatttactaaccgtgttacactgcattggttgaataaattcaa |
5527384 |
T |
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| Q |
108 |
cacgtacatttgaataaacttccttacacacacatat--ttggtaaaaaagaaa----gtcttttacacttgtattatctttactcaattcattattaac |
201 |
Q |
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| T |
5527383 |
cacgtacatttgaataaacttccttacacacacatatatttggtaaaaaaaaaaaaaagtcttttacacttgtattatctttactcaattcattattaac |
5527284 |
T |
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| Q |
202 |
taatataagtgtatgtttgggattcttgtcaagtttt |
238 |
Q |
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| T |
5527283 |
taatataagtgtatgtttgggattcttatcaagtttt |
5527247 |
T |
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