View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19930_low_4 (Length: 609)
Name: NF19930_low_4
Description: NF19930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19930_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 552; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 13 - 595
Target Start/End: Complemental strand, 27982290 - 27981705
Alignment:
| Q |
13 |
attgcaaaatggcgtcactctgcacataaaaactttgtagattagaattgccataaaaaatccttaatcctactacataatactactaaaaaattagcac |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27982290 |
attgcaaaatggcgtcactctgcacataaaaactttgtagattagaattgccataaaaaatccttaatcctactacataatactactaaaaaattagcac |
27982191 |
T |
|
| Q |
113 |
acaaacaagcaactttcaaatacaaaggtcaaactcatttcaagaaacaaatagtggatgttatacatatgcatttcatattataatacacttatgagga |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27982190 |
acaaacaagcaactttcaaatacaaaggtcaaactcatttcaagaaacaaatagtggatgttatacatatgcatttcatattataatacacttatgagga |
27982091 |
T |
|
| Q |
213 |
gtatagtgtgatctatacttcaaactaccccaatgtatgagttttgtgcactcggaattggaagcaggggttgagctatatgtatcactaaagggactca |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27982090 |
gtatagtgtgatctatacttcaaactaccccaatgtatgagttttgtgcactcagaattggaagcaggggttgagctatatgtatcactaaagggactca |
27981991 |
T |
|
| Q |
313 |
attccctgcattctctacatcacacactcaacattagaatagcaacaaaaaatgcaacaccataaaccaccacaggagaccaaccaaacctccttagacc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27981990 |
attccctgcattctctacatcacacactcaacattagaatagcaacaaaaaatgcaacaccataaaccaccacaggagaccaaccaaacctccttagacc |
27981891 |
T |
|
| Q |
413 |
ttcacagtcactacctccatcatccttcactgacaaacaaaacaacc---accagtacctaacttgtacccatcctcttgaaaccaacacctcttgttca |
509 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27981890 |
ttcacagtcaccacctccatcatccttcactgacaaacaaaacaaccaccaccagtacctaacttgtacccatcctcttgaaaccaacacctcttgttca |
27981791 |
T |
|
| Q |
510 |
tcattcatgttgacaccacagaatactaaccctttagcacgcattagaaactccactaaccatatcaaacctattacgaacctatg |
595 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27981790 |
tcattcatgttgacaccacaggatactaaccctttagcacacattagaaactccactaaccatatcaaacctattatgaacctatg |
27981705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 13 - 595
Target Start/End: Complemental strand, 28068820 - 28068235
Alignment:
| Q |
13 |
attgcaaaatggcgtcactctgcacataaaaactttgtagattagaattgccataaaaaatccttaatcctactacataatactactaaaaaattagcac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28068820 |
attgcaaaatggcgtcactctgcacataaaaactttgtagattagaattgccataaaaaatccttaatcctactacataatactactaaaaaattagcac |
28068721 |
T |
|
| Q |
113 |
acaaacaagcaactttcaaatacaaaggtcaaactcatttcaagaaacaaatagtggatgttatacatatgcatttcatattataatacacttatgagga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28068720 |
acaaacaagcaactttcaaatacaaaggtcaaactcatttcaagaaacaaatagtggatgttatacatatgcatttcatattataatacacttatgagga |
28068621 |
T |
|
| Q |
213 |
gtatagtgtgatctatacttcaaactaccccaatgtatgagttttgtgcactcggaattggaagcaggggttgagctatatgtatcactaaagggactca |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28068620 |
gtatagtgtgatctatacttcaaactaccccaatgtatgagttttgtgcactcagaattggaagcaggggttgagctatatgtatcactaaagggactca |
28068521 |
T |
|
| Q |
313 |
attccctgcattctctacatcacacactcaacattagaatagcaacaaaaaatgcaacaccataaaccaccacaggagaccaaccaaacctccttagacc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28068520 |
attccctgcattctctacatcacacactcaacattagaatagcaacaaaaaatgcaacaccataaaccaccacaggagaccaaccaaacctccttagacc |
28068421 |
T |
|
| Q |
413 |
ttcacagtcactacctccatcatccttcactgacaaacaaaacaacc---accagtacctaacttgtacccatcctcttgaaaccaacacctcttgttca |
509 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28068420 |
ttcacagtcaccacctccatcatccttcactgacaaacaaaacaaccaccaccagtacctaacttgtacccatcctcttgaaaccaacacctcttgttca |
28068321 |
T |
|
| Q |
510 |
tcattcatgttgacaccacagaatactaaccctttagcacgcattagaaactccactaaccatatcaaacctattacgaacctatg |
595 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
28068320 |
tcattcatgttgacaccacaggatactaaccctttagcacacattagaaactccactaaccatatcaaacctattatgaacctatg |
28068235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 101 - 311
Target Start/End: Complemental strand, 27983574 - 27983359
Alignment:
| Q |
101 |
aaaaattagcacacaaacaagcaactttcaaatacaaaggtcaaactcatttcaagaaacaaatagtggatgttatacatatgcatttcatattataata |
200 |
Q |
| |
|
||||||||||||| |||||||| |||||| ||||| || || || |||||||| ||||||||| ||||||| |||||||||| ||||||||| || |
|
|
| T |
27983574 |
aaaaattagcacatggacaagcaaatttcaattacaagggcgaagttccattcaagaagcaaatagtgaatgttatgcatatgcattacatattatagta |
27983475 |
T |
|
| Q |
201 |
cacttatgaggagtatagtgtgatctatacttcaaa-----ctaccccaatgtatgagttttgtgcactcggaattggaagcaggggttgagctatatgt |
295 |
Q |
| |
|
||||| |||| ||| |||||| ||| |||||||||| |||||||||| | |||||||| |||||| | |||| |||| |||||||||||| ||| |
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| T |
27983474 |
cacttgtgagaagtgtagtgtaatccatacttcaaaactaactaccccaatatttgagttttctgcacttgaaattagaagttggggttgagctacatgc |
27983375 |
T |
|
| Q |
296 |
atcactaaagggactc |
311 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
27983374 |
atcactaaagggactc |
27983359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 101 - 311
Target Start/End: Complemental strand, 28070104 - 28069889
Alignment:
| Q |
101 |
aaaaattagcacacaaacaagcaactttcaaatacaaaggtcaaactcatttcaagaaacaaatagtggatgttatacatatgcatttcatattataata |
200 |
Q |
| |
|
||||||||||||| |||||||| |||||| ||||| || || || |||||||| ||||||||| ||||||| |||||||||| ||||||||| || |
|
|
| T |
28070104 |
aaaaattagcacatggacaagcaaatttcaattacaagggcgaagttccattcaagaagcaaatagtgaatgttatgcatatgcattacatattatagta |
28070005 |
T |
|
| Q |
201 |
cacttatgaggagtatagtgtgatctatacttcaaa-----ctaccccaatgtatgagttttgtgcactcggaattggaagcaggggttgagctatatgt |
295 |
Q |
| |
|
||||| |||| ||| |||||| ||| |||||||||| |||||||||| | |||||||| |||||| | |||| |||| |||||||||||| ||| |
|
|
| T |
28070004 |
cacttgtgagaagtgtagtgtaatccatacttcaaaactaactaccccaatatttgagttttctgcacttgaaattagaagttggggttgagctacatgc |
28069905 |
T |
|
| Q |
296 |
atcactaaagggactc |
311 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
28069904 |
atcactaaagggactc |
28069889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 8e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 296 - 580
Target Start/End: Original strand, 26418223 - 26418514
Alignment:
| Q |
296 |
atcactaaagggactcaattccctgcattctctacatca---cacactcaacattagaatagcaacaaaaaatgcaacaccataaaccaccacaggagac |
392 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||| |||| ||| ||||||| ||||||| |||||||||| | ||||||| |
|
|
| T |
26418223 |
atcactaaagggactcggttccctgcattctctacatcatgacacactcaacactagattagtaacaaaa--tgcaacatcataaaccacgataggagac |
26418320 |
T |
|
| Q |
393 |
caaccaaacctccttagaccttcacagtcactacctccatc------atccttcactgacaaacaaaacaaccaccagtacctaacttgtacccatcctc |
486 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| | ||||||| ||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
26418321 |
caaccaaccctccttagaccttcacagtcactacctccacctccatgatccttcgctgacaaaccaaacaaccactggtacctaacttgtacccatcctc |
26418420 |
T |
|
| Q |
487 |
ttgaaaccaacacctcttgttcatcattcatgttgacaccacagaatactaaccctttagcacgcattagaaactccactaaccatatcaaacc |
580 |
Q |
| |
|
| |||||||||||||||| |||| ||||| ||||||||||||| ||| ||||||||||| |||||| ||| |||| ||||||||||||||| |
|
|
| T |
26418421 |
tcgaaaccaacacctcttcttcaccattcccgttgacaccacaggccactgaccctttagcatgcattacaaattccagtaaccatatcaaacc |
26418514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 101 - 311
Target Start/End: Original strand, 26417394 - 26417604
Alignment:
| Q |
101 |
aaaaattagcacacaaacaagcaactttcaaatacaaaggtcaaactcatttcaagaaacaaatagtggatgttatacatatgcatttcatattataata |
200 |
Q |
| |
|
|||||||||||||| ||| | || |||||| ||||| | ||| ||| |||||||| ||||||||| |||||||||||||||||| ||||||||| || |
|
|
| T |
26417394 |
aaaaattagcacacggacaggtaaatttcaattacaagagccaagttcaattcaagaagcaaatagtgaatgttatacatatgcattacatattatagta |
26417493 |
T |
|
| Q |
201 |
cacttatgaggagtatagtgtgatctatacttcaaactaccccaatgtatgagttttgtgcactcggaattggaagcaggggttgagctatatgtatcac |
300 |
Q |
| |
|
||||| |||| ||| ||| || ||||||||| |||||||||| || | |||||||| ||||| | |||| ||||||||||||||| || ||| ||||| |
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|
| T |
26417494 |
cacttgtgagaagtgtagcgtaatctatactccaaactacccaaagatctgagttttccgcacttgaaattagaagcaggggttgaggtacatgcatcac |
26417593 |
T |
|
| Q |
301 |
taaagggactc |
311 |
Q |
| |
|
||||||||||| |
|
|
| T |
26417594 |
taaagggactc |
26417604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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