View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19930_low_40 (Length: 235)
Name: NF19930_low_40
Description: NF19930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19930_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 42174175 - 42174394
Alignment:
| Q |
1 |
ccttacgagcaatcctagaatgatagatatccattcaccatcttgannnnnnnagtgttgtaaataagaatattttaaattatctgtattagtagtattc |
100 |
Q |
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| T |
42174175 |
ccttacgagcaatcctagaatgatagatatccattcaccatcttgagggggggagtgttgtaaataagaatattttaaattatctgtattagtagtattc |
42174274 |
T |
|
| Q |
101 |
agcccattaagtttagaatagtctcattaaataaattagtgtgtgtattacagatatatccgatattagtttctgcattattcagttacagacaggaata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42174275 |
agcccattaagtttagaatagtctcattaaataaattagtgcttgtattacagatatatccgatattagtttctgcattattcagttacagacaggaata |
42174374 |
T |
|
| Q |
201 |
tgaaatcagaaaataggtat |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
42174375 |
tgaaatcagaaaataggtat |
42174394 |
T |
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