View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19930_low_42 (Length: 218)
Name: NF19930_low_42
Description: NF19930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19930_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 23 - 211
Target Start/End: Original strand, 41222200 - 41222384
Alignment:
| Q |
23 |
aagtagtttagtggttagaattcattcacctttcgaatctcgacccctgcatataataatatatgtccttatcaattaagttatgttcatggacgtgttt |
122 |
Q |
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| T |
41222200 |
aagtagtttagtggttaggattcat----ctttcgaatctcgacccctgcatataacaatatatgtccttatcaactaagttatattcatggacgtgttt |
41222295 |
T |
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| Q |
123 |
ttctttattattcaagcttgcacgcatcaatgtcatttttcctccaatatttattcttcacataactatttttacaattttgtcctttg |
211 |
Q |
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| T |
41222296 |
ttctttattattcaagcttgcacgcatgaatgtcatttttcctccaatatttattcttcacataactatttttacaattttgtcctttg |
41222384 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 2995236 - 2995184
Alignment:
| Q |
54 |
ttcgaatctcgacccctgcatataataatatatgtccttatcaattaagttat |
106 |
Q |
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| T |
2995236 |
ttcgaatctcgacccctgcatataataatacatatccctatcaactgagttat |
2995184 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 83
Target Start/End: Complemental strand, 43115326 - 43115297
Alignment:
| Q |
54 |
ttcgaatctcgacccctgcatataataata |
83 |
Q |
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| T |
43115326 |
ttcgaatctcgacccctgcatataataata |
43115297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 82
Target Start/End: Complemental strand, 37123244 - 37123216
Alignment:
| Q |
54 |
ttcgaatctcgacccctgcatataataat |
82 |
Q |
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| T |
37123244 |
ttcgaatctcgacccctgcatataataat |
37123216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 4511571 - 4511619
Alignment:
| Q |
63 |
cgacccctgcatataataatatatgtccttatcaattaagttatgttca |
111 |
Q |
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| T |
4511571 |
cgacccctgcatataataatgcatgtccttgccaattgagttatgttca |
4511619 |
T |
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