View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19930_low_45 (Length: 208)
Name: NF19930_low_45
Description: NF19930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19930_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-106
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 39289086 - 39289279
Alignment:
| Q |
1 |
atatgttagcacttgctctttcagctttagggcattttccatatggtaaatcaagagctacacttttctccattggtaacattctagctttaacactatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39289086 |
atatgttagcacttgctctttcagctttagggcattttccatatggtaaatcaagagctacacttttctccattggtaacattctagctttaacactatg |
39289185 |
T |
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| Q |
101 |
tcgaagtgaggcggttttaagacttctttactggtttgttgtcaaaactatagggaagccttgtgtttctcttagaatcaaaacagcaataact |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39289186 |
tcgaagtgaggcggttttaagacttctttactggtttgttgtcaaaactatagggaagccttgtgtttctcttagaatcaaaacagcaataact |
39289279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 39295969 - 39296162
Alignment:
| Q |
1 |
atatgttagcacttgctctttcagctttagggcattttccatatggtaaatcaagagctacacttttctccattggtaacattctagctttaacactatg |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39295969 |
atatgttagcacttgctctttcagttttagggcattttccatatggtaaatcaagagctacacttttctccattggtaacatcctagctttaacactatg |
39296068 |
T |
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| Q |
101 |
tcgaagtgaggcggttttaagacttctttactggtttgttgtcaaaactatagggaagccttgtgtttctcttagaatcaaaacagcaataact |
194 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39296069 |
tcgaagcgaggtggttttaagacttctttactggtttgttgtcaaaactatagggaaaccttgtgtttctcttagaatcaaaacagcaataact |
39296162 |
T |
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