View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19930_low_6 (Length: 575)
Name: NF19930_low_6
Description: NF19930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19930_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 492; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 8 - 559
Target Start/End: Complemental strand, 20923785 - 20923234
Alignment:
| Q |
8 |
aagcaaaggggagccagatatcaagttttcaaaagcatctttagccaccgtaactttttccaattcaagacttttcaagttcatgaagccttcaaacatc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
20923785 |
aagcaaaggggagccagatatcaagttttcaaaagcatctttagccactgtaacttgttccaattgaagacttttcaagttcatgaagccttcaaacatc |
20923686 |
T |
|
| Q |
108 |
gttggaggtttaagcgaagaacaatacaaatttaaatgatgtaaactttgacaagagaataagcagcaaggtatgttatagcgttgctcgaaccaaatgt |
207 |
Q |
| |
|
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
20923685 |
gctggaggtttaagcgaagaacaaaacaaatttaaatgatgtaaactttgacaagagaataagcaccaaggtatgttatagcgttgctcgaaccaaatgt |
20923586 |
T |
|
| Q |
208 |
ccagctcaagatttttaatagaccttcttgttagatgaagaatccaccgatcaatatcagccacagatttcataccaatgagatcacaaccggaatcaga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||| |||||||||| ||||||| |
|
|
| T |
20923585 |
ccagctcaagatttttaatagaccttcttgttagatgaagaatccaccgatcaacatctgccacagatatcataccaatgaaatcacaaccgaaatcaga |
20923486 |
T |
|
| Q |
308 |
gatcttgaacttgttgattggcccagaatgaagtaaaagtacatggtcaacagtcctcacaaacttgttctcgataacagaagggtcttcggaaactgca |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20923485 |
gatcttgaacttgttgattggcccagaatgaagtaaaagtacatggtcaacagtcctcacaaacttgttctcgataacagaaggatcttcggaaactgca |
20923386 |
T |
|
| Q |
408 |
gcagatacacattgtttatcgaacacaagatccggttgtgtggaccattttttcctccatttgttagataaaacacttgttctccctgcttccttgattg |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20923385 |
gcagatacacattgtttatcgaacacaagatccggttgtgtggaccattttttcctccatttgttagataaaacacttgttctccctgcttccttgattg |
20923286 |
T |
|
| Q |
508 |
acaggcgtgaaagaatacggtctattatatgatctggtaagcaactaattct |
559 |
Q |
| |
|
||| ||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
20923285 |
acaagcgtgaaagaaaatggtctattatatgatctggtaagcaactaattct |
20923234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 19 - 559
Target Start/End: Complemental strand, 20927367 - 20926832
Alignment:
| Q |
19 |
agccagatatcaagttttcaaaagcatctttagccaccgtaactttttccaattcaagacttttcaagttcatgaagccttcaaacatcgttggaggttt |
118 |
Q |
| |
|
||||||||||||| ||||| ||| ||| || |||||| || ||| | || |||||||| ||||| || | |||| ||||||| ||||||||||||| |
|
|
| T |
20927367 |
agccagatatcaaattttcgaaatcattttgagccactgttactagattcagatcaagactcttcaaactcttaaagctttcaaacgtcgttggaggttt |
20927268 |
T |
|
| Q |
119 |
aagcgaagaacaatacaaatttaaatgatgtaaactttgacaagagaataagcagcaaggtatgttatagcgttgctcgaaccaaatgtccagctcaaga |
218 |
Q |
| |
|
||| || | |||| || ||||||||||||||||||||||||||||||||||| |||||||| || || | ||| | ||||| |||||| |||| |
|
|
| T |
20927267 |
aagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcaccaaggtatcttggagtatccctctatccaaacttccagcacaagc |
20927168 |
T |
|
| Q |
219 |
tttttaatagaccttcttgttagatgaagaatccaccgatcaatatcagccacagatttcataccaatgagatcacaaccggaatcagagatcttgaact |
318 |
Q |
| |
|
| ||||||||| ||||| |||||||||||||||||| |||||| ||||| |||| || | |||||||| ||| | ||||||| ||||||| |
|
|
| T |
20927167 |
tctttaatagagcttctagttagatgaagaatccactgatcaacatcagacacaagactctcatcaatgagagcac------actcagagaacttgaaca |
20927074 |
T |
|
| Q |
319 |
tgttgattggcccagaatgaagtaaaagtacatggtcaacagtcctcacaaacttgttctcgataacagaagggtcttcggaaactgcagcagatacaca |
418 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||| ||| || ||| |||||| | ||||||| | |||||| |||| |||||||||| ||||| |
|
|
| T |
20927073 |
tgttgattggcccataatgaagtaaaaggacatgatcagcaaatttcaaaaacttcctagcgataactaacaggtctttggaagctgcagcagagacaca |
20926974 |
T |
|
| Q |
419 |
ttgtttatcgaacacaagatccggttgtgtggaccattttttcctcca-tttgttagataaaacacttgttctccctgcttccttgattgacaggcgtga |
517 |
Q |
| |
|
||| |||| || ||||||| ||| ||||| ||| ||| |||||||| ||| ||||||||||||||||||||| |||||||| | |||| || | | |
|
|
| T |
20926973 |
ttgactatcaaagacaagatttggtagtgtgtaccctttgttcctccatttttttagataaaacacttgttctcgctgcttccctaattggcacgtaagt |
20926874 |
T |
|
| Q |
518 |
aagaatacggtctattatatgatctggtaagcaactaattct |
559 |
Q |
| |
|
||||| | ||||||| |||||| ||||||||||||||||| |
|
|
| T |
20926873 |
tagaatctgatctattacatgatcaggtaagcaactaattct |
20926832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 8 - 359
Target Start/End: Complemental strand, 20953300 - 20952955
Alignment:
| Q |
8 |
aagcaaaggggagccagatatcaagttttcaaaagcatctttagccaccgtaactttttccaattcaagacttttcaagttcatgaagccttcaaacatc |
107 |
Q |
| |
|
||||| |||| ||||||| |||||||||||||||||||||| |||||| || ||| | || |||||||| ||||| || | |||||||||||| || |
|
|
| T |
20953300 |
aagcagagggcagccagagatcaagttttcaaaagcatcttgagccactgttactagattcagatcaagactcttcaacctcttaaagccttcaaacgtc |
20953201 |
T |
|
| Q |
108 |
gttggaggtttaagcgaagaacaatacaaatttaaatgatgtaaactttgacaagagaataagcagcaaggtatgttatagcgttgctcgaaccaaatgt |
207 |
Q |
| |
|
|||||||||||||| || | |||| || || |||||||||||||||||||||||||||||||| |||||||| || ||| | | | | ||||| | |
|
|
| T |
20953200 |
gttggaggtttaagacaacaccaatgtaatttcaaatgatgtaaactttgacaagagaataagcaccaaggtatcttgtagtatcccgctatccaaaatt |
20953101 |
T |
|
| Q |
208 |
ccagctcaagatttttaatagaccttcttgttagatgaagaatccaccgatcaatatcagccacagatttcataccaatgagatcacaaccggaatcaga |
307 |
Q |
| |
|
|||| |||| | ||||||||| ||||| |||||||||||||||||||||||||||||| || | | || ||||||||||| |||| | |
|
|
| T |
20953100 |
tcagcacaagctctttaatagagcttctagttagatgaagaatccaccgatcaatatcactcagaaaactctcaccaatgagat------gttcatcata |
20953007 |
T |
|
| Q |
308 |
gatcttgaacttgttgattggcccagaatgaagtaaaagtacatggtcaaca |
359 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20953006 |
gaacttgaacatgttgattggcccagaatgaagtaaaagtacatgatcaaca |
20952955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 19 - 559
Target Start/End: Complemental strand, 20934751 - 20934217
Alignment:
| Q |
19 |
agccagatatcaagttttcaaaagcatctttagccaccgtaactttttccaattcaagacttttcaagttcatgaagccttcaaacatcgttggaggttt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| | || | | || ||||||||||||||| || | ||||||| ||||| |||||||||||| |
|
|
| T |
20934751 |
agccagatatcaagttttcaaaagcatcttgagccactgctacatgattcagatcaagacttttcaagctcctaaagcctttaaacaacgttggaggttt |
20934652 |
T |
|
| Q |
119 |
aagcgaagaacaatacaaatttaaatgatgtaaactttgacaagagaataagcagcaaggtatgttatagcgttgctcgaaccaaatgtccagctcaaga |
218 |
Q |
| |
|
||| || | ||| || || |||||||||||||||||||||||||||||||| |||||||| || ||| ||| ||| |||| |||||| |||| |
|
|
| T |
20934651 |
aagacaacagaaatgtaatttcaaatgatgtaaactttgacaagagaataagcaccaaggtatcttgtagagttcctctgtacaaacatccagcacaagc |
20934552 |
T |
|
| Q |
219 |
tttttaatagaccttcttgttagatgaagaatccaccgatcaatatcagccacagatttcataccaatgagatcacaaccggaatcagagatcttgaact |
318 |
Q |
| |
|
| |||||||||| | || |||||| ||||||||| |||||| ||| | |||| || | ||||| || |||| || ||||| |||||| |
|
|
| T |
20934551 |
tctttaatagacttcctacttagatatagaatccactgatcaacatcggacacaagactctcatcaatgggagcacac-----at-agagaacttgaata |
20934458 |
T |
|
| Q |
319 |
tgttgattggcccagaatgaagtaaaagtacatggtcaacagtcctcacaaacttgttctcgataacagaagggtcttcggaaactgcagcagatacaca |
418 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| | |||| | ||| ||| || ||| ||||| | | ||||||| || |||||||||| | ||| |
|
|
| T |
20934457 |
tgttgattggcccagaatgatgtaaaagtacactattaacaattttcaaaaatttcatctgaataactaacgtgtcttcgtaagctgcagcagagagaca |
20934358 |
T |
|
| Q |
419 |
ttgtttatcgaacacaagatccggttgtgtggaccattttttcctccatttgttagataaaacacttgttctccctgcttccttgattgacaggcgtgaa |
518 |
Q |
| |
|
|||| |||| |||||||||| || ||||| ||||||| ||||||||||| ||||||||||||||||||||| |||||||| | |||| || | | |
|
|
| T |
20934357 |
ttgtctatcaaacacaagatttgggagtgtgtaccatttgttcctccattttttagataaaacacttgttctcactgcttccctaattggcaagtaagtc |
20934258 |
T |
|
| Q |
519 |
agaatacggtctattatatgatctggtaagcaactaattct |
559 |
Q |
| |
|
||||| ||||||||| |||| ||||||||||||| ||||| |
|
|
| T |
20934257 |
agaatctggtctattacatgacctggtaagcaacttattct |
20934217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 71 - 559
Target Start/End: Complemental strand, 39274297 - 39273806
Alignment:
| Q |
71 |
ttcaagacttttcaagttcatgaagccttcaaacatcgttggaggtttaagcgaagaacaatacaaatttaaatgatgtaaactttgacaagagaataag |
170 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||| | ||||||||||||||| || ||||| ||| |||||| | || ||||||||||| ||||||||| |
|
|
| T |
39274297 |
ttcaagtcttttcaagttcctgaagccttcaaatgttgttggaggtttaagccaacaacaagccaactttaaacgttgcaaactttgacaggagaataag |
39274198 |
T |
|
| Q |
171 |
cagcaaggtatgttatagcgttg---ctcgaaccaaatgtccagctcaagatttttaatagaccttcttgttagatgaagaatccaccgatcaatatcag |
267 |
Q |
| |
|
|| |||||||| |||||| || ||| | ||| | |||| |||| | |||||||||||||| |||||| || |||||||||||||| ||| |
|
|
| T |
39274197 |
caccaaggtatcttatagatttcatcctctgccaaaacatgcagcacaagctctttaatagaccttccgattagataaacaatccaccgatcaaattcat |
39274098 |
T |
|
| Q |
268 |
ccacagatttcataccaatgagatcacaaccggaatcagagatcttgaacttgttgattggcccagaatgaagtaaaagtacatggtcaacagtcctcac |
367 |
Q |
| |
|
| ||| || ||| || ||| ||| || ||||||| || |||||||||||| || ||||| ||||||||||||||||| |||||| | ||| |
|
|
| T |
39274097 |
tcccaggaatcccttcaacgaaatcctgaccagagtcagagaactcgaacttgttgataggtccagagtgaagtaaaagtacatgatcaacaattttcaa |
39273998 |
T |
|
| Q |
368 |
aaacttgttctcgataacagaagggtcttcggaaactgcagcagatacacattgtttatcgaacacaagatccggttgtgtggaccattttttcctccat |
467 |
Q |
| |
|
|| ||||||||| ||| | ||||||||| |||| || |||||| ||||| || |||| |||||||||| ||| ||||| ||||||| | ||||||| |
|
|
| T |
39273997 |
aagcttgttctcaatatctaaagggtcttgggaacctctagcagagacacaacgtctatcaaacacaagatttggtagtgtgtaccatttgtacctccat |
39273898 |
T |
|
| Q |
468 |
ttgttagataaaacacttgttctccctgcttccttgattgacaggcgtgaaagaatacggtctattatatgatctggtaagcaactaattct |
559 |
Q |
| |
|
| | | || ||||||||||||||| |||||||| | |||| || || || ||||| | ||||||| |||| | ||||||||||||||||| |
|
|
| T |
39273897 |
tggctggacaaaacacttgttctcactgcttccctaattggcaagcaagacagaatctgatctattacatgacccggtaagcaactaattct |
39273806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 452 - 496
Target Start/End: Complemental strand, 20952868 - 20952824
Alignment:
| Q |
452 |
ccattttttcctccatttgttagataaaacacttgttctccctgc |
496 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
20952868 |
ccatttgttcctccattttctagataaaacacttgttctcactgc |
20952824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 73 - 507
Target Start/End: Complemental strand, 17970104 - 17969670
Alignment:
| Q |
73 |
caagacttttcaagttcatgaagccttcaaacatcgttggaggtttaagcgaagaacaatacaaatttaaatgatgtaaactttgacaagagaataagca |
172 |
Q |
| |
|
||||||||| |||| | ||||||||| |||||||||||| ||||| ||| || || | || ||||||||||||||||||||| |||| |||||||| |
|
|
| T |
17970104 |
caagactttccaagctactgaagcctttaaacatcgttgggggtttcagcaaacaatgacttaattttaaatgatgtaaactttgataagaaaataagca |
17970005 |
T |
|
| Q |
173 |
gcaaggtatgttatagcgttgctcgaaccaaatgtccagctcaagatttttaatagaccttcttgttagatgaagaatccaccgatcaatatcagccaca |
272 |
Q |
| |
|
|||||||| |||||| ||| | | ||||||||||| | |||| | ||||| ||| |||| ||||||||||||||||||||||||| |||||||| | |
|
|
| T |
17970004 |
ccaaggtatcttatagagttcccctgcccaaatgtccaacacaagctctttaacagatcttccagttagatgaagaatccaccgatcaacatcagccata |
17969905 |
T |
|
| Q |
273 |
gatttcataccaatgagatcacaaccggaatcagagatcttgaacttgttgattggcccagaatgaagtaaaagtacatggtcaacagtcctcacaaact |
372 |
Q |
| |
|
|| |||| ||||| ||||||||| | || |||| || | ||||||||||||||||| |||||||||||||||||||| |||| | |||| ||||| |
|
|
| T |
17969904 |
gagttcacaccaaggagatcacattcagagtcagtgacttcaaacttgttgattggccctgaatgaagtaaaagtacatgatcaatgattctcaaaaact |
17969805 |
T |
|
| Q |
373 |
tgttctcgataacagaagggtcttcggaaactgcagcagatacacattgtttatcgaacacaagatccggttgtgtggaccattttttcctccatttgtt |
472 |
Q |
| |
|
|| ||||||||| ||| |||||||||| || ||| ||||||||||||| |||| ||||||||||| ||||| || |||||||| ||| |||||||| | |
|
|
| T |
17969804 |
tgccctcgataactgaaaagtcttcggaagctacagtagatacacattgtctatcaaacacaagatctggttgggtagaccatttcttcttccatttgct |
17969705 |
T |
|
| Q |
473 |
agataaaacacttgttctccctgcttccttgattg |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
17969704 |
cgataaaacacttgttctccctgcttccttgattg |
17969670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 8e-78; HSPs: 27)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 68 - 559
Target Start/End: Complemental strand, 3361966 - 3361475
Alignment:
| Q |
68 |
caattcaagacttttcaagttcatgaagccttcaaacatcgttggaggtttaagcgaagaacaatacaaatttaaatgatgtaaactttgacaagagaat |
167 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| | ||||||||||||||| || | || | || | |||||||||||||||||||||||||||| |
|
|
| T |
3361966 |
caattcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaat |
3361867 |
T |
|
| Q |
168 |
aagcagcaaggtatgttatagcgttgctcgaaccaaatgtccagctcaagatttttaatagaccttcttgttagatgaagaatccaccgatcaatatcag |
267 |
Q |
| |
|
||||| ||||| || |||||||||| || |||||||||| |||| ||| | |||||||| ||||| ||||| |||| |||||||| | |||||| | |
|
|
| T |
3361866 |
aagcaccaagggatcttatagcgttcgtctaaccaaatgtgcagcacaaactctttaataggccttcgggttaggtgaataatccacctttgaatatctg |
3361767 |
T |
|
| Q |
268 |
ccacagatttcataccaatgagatcacaaccggaatcagagatcttgaacttgttgattggcccagaatgaagtaaaagtacatggtcaacagtcctcac |
367 |
Q |
| |
|
|| ||| ||| || |||||||| |||| | | || ||||| ||||||||||||||||||| ||||||||||||||||||| |||||| | |||| |
|
|
| T |
3361766 |
tcatagaactcaaactaatgagattacaatagtagtcgcggatctggaacttgttgattggcccataatgaagtaaaagtacatgatcaacaattctcaa |
3361667 |
T |
|
| Q |
368 |
aaacttgttctcgataacagaagggtcttcggaaactgcagcagatacacattgtttatcgaacacaagatccggttgtgtggaccattttttcctccat |
467 |
Q |
| |
|
||||||||| | |||||| |||||||||| |||| ||| | |||| | || |||||||| || ||||||| ||| | ||| ||||||| || |||||| |
|
|
| T |
3361666 |
aaacttgttattgataaccgaagggtcttgggaatctgtatcagagatgcaatgtttatcaaatacaagatttggtagcgtgtaccatttgttactccat |
3361567 |
T |
|
| Q |
468 |
ttgttagataaaacacttgttctccctgcttccttgattgacaggcgtgaaagaatacggtctattatatgatctggtaagcaactaattct |
559 |
Q |
| |
|
||| | ||||||| |||||||||| ||||||||||||||| || | ||| | || ||||||||| ||||||||||||||||||||||| |
|
|
| T |
3361566 |
ttgctggataaaatacttgttctcactgcttccttgattggcaagtatgacaagatctggtctattacgtgatctggtaagcaactaattct |
3361475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 92 - 557
Target Start/End: Original strand, 2948271 - 2948739
Alignment:
| Q |
92 |
gaagccttcaaacatcgttggaggtttaagcgaagaacaatacaaatttaaatgatgtaaactttgacaagagaataagcagcaaggtatgttatagcgt |
191 |
Q |
| |
|
||||||||||||| | ||||||||||||||| || || ||| || || |||||||||||||| ||| || ||||||||| | ||||||| ||||||||| |
|
|
| T |
2948271 |
gaagccttcaaactttgttggaggtttaagccaacaataattcagatctaaatgatgtaaaccttggcaggagaataaggatgaaggtatcttatagcgt |
2948370 |
T |
|
| Q |
192 |
tgctcgaaccaaatgtccagctcaagatttttaatagaccttcttgttagatgaagaatccaccgatcaatatcagccacagatttcataccaat---ga |
288 |
Q |
| |
|
|| || || |||||||||| | ||| | ||||||| ||||| ||||||||| ||||||||||||||||||| |||| || |||| | |||| || |
|
|
| T |
2948371 |
tgatcaaaacaaatgtccaacacaaactctttaatatgccttccggttagatgacgaatccaccgatcaatatctgccatagcgttcacatcaataatga |
2948470 |
T |
|
| Q |
289 |
gatcacaaccggaatcagagatcttgaacttgttgattggcccagaatgaagtaaaagtacatggtcaacagtcctcacaaacttgttctcgataacaga |
388 |
Q |
| |
|
|||| | ||| ||||||| || |||||||||||||||||||||||||||||||||||||| |||||| | |||| ||||||| |||| ||||| || |
|
|
| T |
2948471 |
tgtcacgataggagtcagagacctcaaacttgttgattggcccagaatgaagtaaaagtacatgatcaacaattctcaaaaacttgctctcaataactga |
2948570 |
T |
|
| Q |
389 |
agggtcttcggaaactgcagcagatacacattgtttatcgaacacaagatccggttgtgtggaccattttttcctccatttgttagataaaacacttgtt |
488 |
Q |
| |
|
|||||||| ||||| ||||| |||||||||| | |||| ||||||||||| ||||||||||||||||| |||||||||| | | ||||| ||||||||| |
|
|
| T |
2948571 |
agggtctttggaaattgcagtagatacacatcgactatcaaacacaagatctggttgtgtggaccatttattcctccattcgctcgataacacacttgtt |
2948670 |
T |
|
| Q |
489 |
ctccctgcttccttgattgacaggcgtgaaagaatacggtctattatatgatctggtaagcaactaatt |
557 |
Q |
| |
|
| |||||||||| |||| || | |||| ||||| | |||| | |||||||||||||||||||||| |
|
|
| T |
2948671 |
gttactgcttccttaattgtcaagtgtgagagaatctgccctataagatgatctggtaagcaactaatt |
2948739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 19 - 557
Target Start/End: Complemental strand, 3340808 - 3340267
Alignment:
| Q |
19 |
agccagatatcaagttttcaaaagcatctttagccaccgtaactttttccaattcaagacttttcaagttcatgaagccttcaaacatcgttggaggttt |
118 |
Q |
| |
|
||||| |||||| ||||||||||||||||| || || ||||||| ||| |||||||||||| ||| ||||||||||||| |||||||||| || |
|
|
| T |
3340808 |
agccacatatcatgttttcaaaagcatcttgagtcattgtaacttcaaacaaagaaagacttttcaaattccggaagccttcaaacgtcgttggaggatt |
3340709 |
T |
|
| Q |
119 |
aagcgaagaacaatacaaatttaaatgatgtaaactttgacaagagaataagcagcaaggtatgttatagcgttgctcgaaccaaatgtccagctcaaga |
218 |
Q |
| |
|
||| || || ||| || | |||||| || |||||||||||||||||||||||||||||||| ||||||||| | | |||| |||||||||| ||| |
|
|
| T |
3340708 |
aaggcaacaataattcagttctaaatgttgcaaactttgacaagagaataagcagcaaggtattttatagcgtggttttaacctaatgtccagcacaaac |
3340609 |
T |
|
| Q |
219 |
tttttaatagaccttcttgttagatgaagaatccaccgatcaatatcagccacagatttcataccaat---gagatcacaaccggaatcagagatcttga |
315 |
Q |
| |
|
| ||||||| ||||| | | || |||| ||||||| ||||||||||||||| ||| |||| |||||| || || | ||| || |||| || | |
|
|
| T |
3340608 |
tctttaatataccttttggatatctgaaaaatccactgatcaatatcagccatagagttcacaccaatagtgaaatattgattggagtccgagacctcaa |
3340509 |
T |
|
| Q |
316 |
acttgttgattggcccagaatgaagtaaaagtacatggtcaacagtcctcacaaacttgttctcgataacagaagggtcttcggaaactgcagcagatac |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| | || | ||||||| |||| ||||| ||||||| || |||| | ||| |||||| |
|
|
| T |
3340508 |
acttgttgattggcccagaatgaagtaaaagtacatgatcaacaattcttaaaaacttgctctcaataactgaagggtgtttggaagtttcagtagatac |
3340409 |
T |
|
| Q |
416 |
acattgtttatcgaacacaagatccggttgtgtggaccattttttcctccatttgttagataaaacacttgttctccctgcttccttgattgacaggcgt |
515 |
Q |
| |
|
||||| ||| ||||||||||| ||| ||||||||||| || ||||| ||| | ||||||||||||||||| |||||||||| ||||||| | || |
|
|
| T |
3340408 |
acattcacgatcaaacacaagatctggtaaagtggaccatttctttctccaattgctcgataaaacacttgttcttactgcttccttaattgacaagtgt |
3340309 |
T |
|
| Q |
516 |
gaaagaatacggtctattatatgatctggtaagcaactaatt |
557 |
Q |
| |
|
|| ||||| | ||||| | |||||||||||||||||||||| |
|
|
| T |
3340308 |
gagagaatcagctctataagatgatctggtaagcaactaatt |
3340267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 74 - 557
Target Start/End: Complemental strand, 3349627 - 3349141
Alignment:
| Q |
74 |
aagacttttcaagttcatgaagccttcaaacatcgttggaggtttaagcgaagaacaatacaaatttaaatgatgtaaactttgacaagagaataagcag |
173 |
Q |
| |
|
||||||||||| ||| |||||||||||| || ||||||||||||||| | || ||| || ||||||||| ||||||| ||| || ||||||||| | |
|
|
| T |
3349627 |
aagacttttcagattccggaagccttcaaaaattgttggaggtttaagccagcaataattcagatttaaatgttgtaaaccttggcaggagaataaggat |
3349528 |
T |
|
| Q |
174 |
caaggtatgttatagcgttgctcgaaccaaatgtccagctcaagatttttaatagaccttcttgttagatgaagaatccaccgatcaatatcagccacag |
273 |
Q |
| |
|
||||||| | |||||||| || || | |||||||| | ||| | ||||||| |||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
3349527 |
gaaggtatcatttagcgttgatcaaaactaatgtccaacacaaactctttaatatgtcttccggttagatgaagaatccaccgatcaatatcagttgtag |
3349428 |
T |
|
| Q |
274 |
atttca---taccaatgagatcacaaccggaatcagagatcttgaacttgttgattggcccagaatgaagtaaaagtacatggtcaacagtcctcacaaa |
370 |
Q |
| |
|
| | || || ||||| ||||| | || || |||| || |||||||||||| ||||||||||||||||||||||||| |||| | | |||| ||| |
|
|
| T |
3349427 |
agtacacattaataatgatatcacgattggggtcggagacctcaaacttgttgattagcccagaatgaagtaaaagtacatgatcaataattctcaaaaa |
3349328 |
T |
|
| Q |
371 |
cttgttctcgataacagaagggtcttcggaaactgcagcagatacacattgtttatcgaacacaagatccggttgtgtggaccattttttcctccatttg |
470 |
Q |
| |
|
|||| |||| ||||| ||||| | | |||| | ||| |||||||||| | |||| ||||||||||| ||| ||||||||||||| |||||||||| | |
|
|
| T |
3349327 |
cttgctctcaataactgaaggttttagggaagtttcagtagatacacatagactatcaaacacaagatctggtagtgtggaccatttcttcctccattcg |
3349228 |
T |
|
| Q |
471 |
ttagataaaacacttgttctccctgcttccttgattgacaggcgtgaaagaatacggtctattatatgatctggtaagcaactaatt |
557 |
Q |
| |
|
| ||||| ||||||||||| ||| |||||| |||| || | |||| ||||| | ||||| | |||||||||||||||||||||| |
|
|
| T |
3349227 |
ctcgataacacacttgttcttactgattccttaattgtcaagtgtgagagaatctgctctataagatgatctggtaagcaactaatt |
3349141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 93 - 557
Target Start/End: Original strand, 9818714 - 9819181
Alignment:
| Q |
93 |
aagccttcaaacatcgttggaggtttaagcgaagaacaatacaaatttaaatgatgtaaactttgacaagagaataagcagcaaggtatgttatagcgtt |
192 |
Q |
| |
|
|||||||||||||| ||||||||||||||| || || ||| | || |||||||||||||| ||| || ||||||||| | ||||||| |||||||||| |
|
|
| T |
9818714 |
aagccttcaaacattgttggaggtttaagccaacaataattaagatctaaatgatgtaaaccttggcaggagaataaggatgaaggtatcttatagcgtt |
9818813 |
T |
|
| Q |
193 |
gctcgaaccaaatgtccagctcaagatttttaatagaccttcttgttagatgaagaatccaccgatcaatatcagccacagatttcataccaat---gag |
289 |
Q |
| |
|
| || || |||||||||| | ||| | ||||||| || ||| |||||||||| ||||||| ||| ||||||||||| || |||| | |||| || |
|
|
| T |
9818814 |
gatcaaaacaaatgtccaacacaaactctttaatatactttccggttagatgaacaatccactgattaatatcagccatagcgttcacatcaataatgat |
9818913 |
T |
|
| Q |
290 |
atcacaaccggaatcagagatcttgaacttgttgattggcccagaatgaagtaaaagtacatggtcaacagtcctcacaaacttgttctcgataacagaa |
389 |
Q |
| |
|
|| | | ||| | ||||| || | ||||||||||||||| |||||||||||||||||||| |||| | | |||| |||||| |||| | ||| ||| |
|
|
| T |
9818914 |
gtcccgataggagttagagacctcaatcttgttgattggcccggaatgaagtaaaagtacatgatcaataattctcaaaaactttctctcaacaaccgaa |
9819013 |
T |
|
| Q |
390 |
gggtcttcggaaactgcagcagatacacattgtttatcgaacacaagatccggttgtgtggaccattttttcctccatttgttagataaaacacttgttc |
489 |
Q |
| |
|
|||| |||||| ||| | |||||||||| | |||| ||||||||||| ||||||||||||||||| ||||| ||| | | ||||| | |||||||| |
|
|
| T |
9819014 |
gggttttcggaggttgccgtagatacacatcgactatcaaacacaagatctggttgtgtggaccatttcttcctgtattcgctcgataacaaacttgttc |
9819113 |
T |
|
| Q |
490 |
tccctgcttccttgattgacaggcgtgaaagaatacggtctattatatgatctggtaagcaactaatt |
557 |
Q |
| |
|
| |||||||||| |||| || | |||| |||| | | ||| | ||||||||||||| |||||||| |
|
|
| T |
9819114 |
ttactgcttccttaattgtcaagtgtgagggaatctgctgtataagatgatctggtaagaaactaatt |
9819181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 313 - 559
Target Start/End: Complemental strand, 3372693 - 3372447
Alignment:
| Q |
313 |
tgaacttgttgattggcccagaatgaagtaaaagtacatggtcaacagtcctcacaaacttgttctcgataacagaagggtcttcggaaactgcagcaga |
412 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||| |||||| | |||| ||||||||| | |||||| |||| || || |||| ||||| |||| |
|
|
| T |
3372693 |
tgaacttgttgattggaccagaatgttgtaaaagtacatgatcaacaattctcaaaaacttgttattgataactgaagtgtatttggaagctgcaacaga |
3372594 |
T |
|
| Q |
413 |
tacacattgtttatcgaacacaagatccggttgtgtggaccattttttcctccatttgttagataaaacacttgttctccctgcttccttgattgacagg |
512 |
Q |
| |
|
| || ||||| | |||||||||| ||| ||||| ||||||| |||||||| || | |||||||||||||||||| ||||||| || |||| || | |
|
|
| T |
3372593 |
gatgcaatgtttgttaaacacaagatttggtagtgtgtaccatttgttcctccagctgctggataaaacacttgttctcactgcttctttaattggcatg |
3372494 |
T |
|
| Q |
513 |
cgtgaaagaatacggtctattatatgatctggtaagcaactaattct |
559 |
Q |
| |
|
|||| ||||| | ||||||| |||| ||||||||||||||||||| |
|
|
| T |
3372493 |
agtgagagaatctgatctattacatgacctggtaagcaactaattct |
3372447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 221 - 359
Target Start/End: Original strand, 3218455 - 3218593
Alignment:
| Q |
221 |
tttaatagaccttcttgttagatgaagaatccaccgatcaatatcagccacagatttcataccaatgagatcacaaccggaatcagagatcttgaacttg |
320 |
Q |
| |
|
|||||||||| || ||||||| ||||||||||||||||||||||||||||||| || | | || ||||||||||||||| || |||| || ||||||| |
|
|
| T |
3218455 |
tttaatagacttttctgttagacgaagaatccaccgatcaatatcagccacagagttaacatcactgagatcacaaccggggtcggagagctggaacttg |
3218554 |
T |
|
| Q |
321 |
ttgattggcccagaatgaagtaaaagtacatggtcaaca |
359 |
Q |
| |
|
||||| || ||||||||||||| ||||||||| |||||| |
|
|
| T |
3218555 |
ttgatcggtccagaatgaagtagaagtacatgatcaaca |
3218593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 311 - 496
Target Start/End: Original strand, 4323139 - 4323324
Alignment:
| Q |
311 |
cttgaacttgttgattggcccagaatgaagtaaaagtacatggtcaacagtcctcacaaacttgttctcgataacagaagggtcttcggaaactgcagca |
410 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||| | || ||||||| ||| ||||| ||||||||| |||| || ||||| |
|
|
| T |
4323139 |
cttgaacatgttgattggcccagaatgaagtaaaagtacatgatcaaccattttcgaaaacttgggctcaataactaaagggtcttgggaagcttcagca |
4323238 |
T |
|
| Q |
411 |
gatacacattgtttatcgaacacaagatccggttgtgtggaccattttttcctccatttgttagataaaacacttgttctccctgc |
496 |
Q |
| |
|
|| ||||||||| |||| | |||||||| || |||| |||||||||||||||| || | || ||||||||||||||| |||| |
|
|
| T |
4323239 |
gacacacattgtctatcaagcacaagatttggaagtgtataccattttttcctccaattcctcgacaaaacacttgttctcactgc |
4323324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 72 - 262
Target Start/End: Original strand, 4334790 - 4334980
Alignment:
| Q |
72 |
tcaagacttttcaagttcatgaagccttcaaacatcgttggaggtttaagcgaagaacaatacaaatttaaatgatgtaaactttgacaagagaataagc |
171 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||||||| || | | || || |||||| ||||||||||||||| |||||||| | |
|
|
| T |
4334790 |
tcaagacttttcaagtttctaaagccttcaaacatcgttggaggtttaagcaaacacccatttaattttaaagaatgtaaactttgacatgagaataaac |
4334889 |
T |
|
| Q |
172 |
agcaaggtatgttatagcgttgctcgaaccaaatgtccagctcaagatttttaatagaccttcttgttagatgaagaatccaccgatcaat |
262 |
Q |
| |
|
| ||||||| || ||| | || | ||||| |||| | |||| | |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4334890 |
accaaggtaacttgtagtaatcatctatccaaacttccaacacaagctctttaatagaccttccaattagatgaagaatccaccgatcaat |
4334980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 66 - 187
Target Start/End: Complemental strand, 2006701 - 2006580
Alignment:
| Q |
66 |
tccaattcaagacttttcaagttcatgaagccttcaaacatcgttggaggtttaagcgaagaacaatacaaatttaaatgatgtaaactttgacaagaga |
165 |
Q |
| |
|
||||| ||||||||||| |||||| | |||||||||| | ||| ||||||||||||| || || |||| || ||| ||||||||||||||||||||| | |
|
|
| T |
2006701 |
tccaaatcaagactttttaagttcttcaagccttcaatcgtcgatggaggtttaagcaaacaataatataatgttagatgatgtaaactttgacaagaaa |
2006602 |
T |
|
| Q |
166 |
ataagcagcaaggtatgttata |
187 |
Q |
| |
|
||||||| |||||||| ||||| |
|
|
| T |
2006601 |
ataagcaccaaggtatcttata |
2006580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 3378976 - 3378878
Alignment:
| Q |
74 |
aagacttttcaagttcatgaagccttcaaacatcgttggaggtttaagcgaagaacaatacaaatttaaatgatgtaaactttgacaagagaataagca |
172 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| || |||||||||||||| | ||||||| || |||||||| ||||||||||||||||||||||||| |
|
|
| T |
3378976 |
aagacttttcaaattcttgaagccttcaaatattgttggaggtttaagtcgacaacaatataagcttaaatgacgtaaactttgacaagagaataagca |
3378878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 23 - 559
Target Start/End: Original strand, 6601511 - 6602029
Alignment:
| Q |
23 |
agatatcaagttttcaaaagcatctttagccaccgtaactttttccaattcaagacttttcaagttcatgaagccttcaaacatcgttggaggtttaagc |
122 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||| | || || |||||||| ||||||||| |||| |||| ||| | | ||| ||| ||||| |
|
|
| T |
6601511 |
agatatcaagttttcaaaagcatcttgagacaaggtaacatgttgcagatcaagactcttcaagttcctgaatccttgaaatgttgatggtggtataagc |
6601610 |
T |
|
| Q |
123 |
gaagaacaatacaaatttaaatgatgtaaactttgacaagagaataagcagcaaggtatgttatagcgttgctcgaaccaaatgtccagctcaagatttt |
222 |
Q |
| |
|
|| | | | || | |||||||||||||| ||||||||| |||||||| ||||||| |||||||||||| | ||| || |||||| ||| | || |
|
|
| T |
6601611 |
caacagttaaataattctaaatgatgtaaaccttgacaagaaaataagcatgaaggtattttatagcgttgccctttccagatttccagcacaaactctt |
6601710 |
T |
|
| Q |
223 |
taatagaccttcttgttagatgaagaatccaccgatcaatatcagccacagatttcataccaatgagatcacaaccggaatcagagatcttgaacttgtt |
322 |
Q |
| |
|
||| || |||||| |||||||||||| |||| ||||||||||| | ||| |||||||| || | | ||| || ||||||||| || |
|
|
| T |
6601711 |
taacaggccttctggttagatgaagagtccatcgatcaatatcggtcact---------ccaatgagctcgcgatggga------gagcttgaacttttt |
6601795 |
T |
|
| Q |
323 |
gattggcccagaatgaagtaaaagtacatggtcaacagtcctcacaaacttgttctcgataacagaagggtcttcggaaactgcagcagatacacattgt |
422 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||| | | ||| || ||| ||| |||||| || ||||||| ||| || | ||||||| ||| |
|
|
| T |
6601796 |
gattggcccagaatggagtaaaagtacatgatcaataattctcgaaagtttgctcttgataactaaaaggtcttcagaag-tgtcggagataca--ttgg |
6601892 |
T |
|
| Q |
423 |
ttatcgaacacaagatccggttgtgtggaccattttttcctccatttgttagataaaacacttgttctccctgcttccttgattgacaggcgtgaaagaa |
522 |
Q |
| |
|
|||| |||||||||| || |||||| |||||| | |||||||||| | ||||||| |||||||||| |||||||||| |||| || ||| |||| |
|
|
| T |
6601893 |
ctatcaaacacaagatttggaagtgtggcccatttgtacctccatttggttgataaaatacttgttctcactgcttccttaattggcaaaattgagagaa |
6601992 |
T |
|
| Q |
523 |
tacggtctattatatgatctggtaagcaactaattct |
559 |
Q |
| |
|
| |||||||||||||| ||||||| | ||||||||| |
|
|
| T |
6601993 |
tttggtctattatatgacctggtaaactactaattct |
6602029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 301 - 491
Target Start/End: Complemental strand, 2010564 - 2010377
Alignment:
| Q |
301 |
aatcagagatcttgaacttgttgattggcccagaatgaagtaaaagtacatggtcaacagtcctcacaaacttgttctcgataacagaagggtcttcgga |
400 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||| ||||||||||||||| |||| | | || || ||| |||||||||| ||||| | ||| |
|
|
| T |
2010564 |
aatcagagagcttgaacttgttgattggcccggaataaagtaaaagtacatgatcaataattgccaaaagctttctctcgataactaaagggcgatggga |
2010465 |
T |
|
| Q |
401 |
aactgcagcagatacacattgtttatcgaacacaagatccggttgtgtggaccattttttcctccatttgttagataaaacacttgttctc |
491 |
Q |
| |
|
|| ||||| |||||||||||||| |||||||||| ||| ||||| |||||| | |||||||||||| ||||||||||||||||| |
|
|
| T |
2010464 |
---tgttgcagagacacattgtttatcaaacacaagatttggtattgtggtccatttgtacctccatttgttgcataaaacacttgttctc |
2010377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 14 - 258
Target Start/End: Complemental strand, 3372992 - 3372748
Alignment:
| Q |
14 |
aggggagccagatatcaagttttcaaaagcatctttagccaccgtaactttttccaattcaagacttttcaagttcatgaagccttcaaacatcgttgga |
113 |
Q |
| |
|
|||| |||||||||||| |||||||||| |||||| ||||| ||||| | ||||| | |||| || || |||| |||| ||||||||| | |||||| |
|
|
| T |
3372992 |
agggcagccagatatcatgttttcaaaatcatcttgagccagtgtaacctcttccagatgaagatattgcaggttcttgaaaccttcaaacgttgttgga |
3372893 |
T |
|
| Q |
114 |
ggtttaagcgaagaacaatacaaatttaaatgatgtaaactttgacaagagaataagcagcaaggtatgttatagcgttgctcgaaccaaatgtccagct |
213 |
Q |
| |
|
||||||| | ||||| | || |||||||| |||||||||||||||||||||| | ||||||| ||||| |||| || ||||||| || |||| |
|
|
| T |
3372892 |
agtttaagttgacaacaagataagcttaaatgacgtaaactttgacaagagaataaactcaaaggtatcttataacgtttgtctaaccaaaagtgcagca |
3372793 |
T |
|
| Q |
214 |
caagatttttaatagaccttcttgttagatgaagaatccaccgat |
258 |
Q |
| |
|
||| | ||| ||||||||||| | ||||||||||| ||| |||| |
|
|
| T |
3372792 |
gaagctcttttatagaccttctagatagatgaagaacccaacgat |
3372748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 74 - 187
Target Start/End: Complemental strand, 2012186 - 2012073
Alignment:
| Q |
74 |
aagacttttcaagttcatgaagccttcaaacatcgttggaggtttaagcgaagaacaatacaaatttaaatgatgtaaactttgacaagagaataagcag |
173 |
Q |
| |
|
|||||||||||||||| | |||||||||| ||||| ||||||||||||| || || || | || ||| || |||||| ||||||||||| |||||||| |
|
|
| T |
2012186 |
aagacttttcaagttcttcaagccttcaatcatcgatggaggtttaagcaaacaagaaaataatgttagataatgtaagctttgacaagaaaataagcac |
2012087 |
T |
|
| Q |
174 |
caaggtatgttata |
187 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
2012086 |
caaggtatcttata |
2012073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 74 - 187
Target Start/End: Complemental strand, 2019989 - 2019876
Alignment:
| Q |
74 |
aagacttttcaagttcatgaagccttcaaacatcgttggaggtttaagcgaagaacaatacaaatttaaatgatgtaaactttgacaagagaataagcag |
173 |
Q |
| |
|
|||||||||||||||| | |||||||||| | ||| ||||||||||||| || || || | ||| ||| |||| |||| ||||||||||| |||||||| |
|
|
| T |
2019989 |
aagacttttcaagttcttaaagccttcaatcgtcgatggaggtttaagcaaacaataagataaacttagatgaagtaagctttgacaagaaaataagcac |
2019890 |
T |
|
| Q |
174 |
caaggtatgttata |
187 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
2019889 |
caaggtatcttata |
2019876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 3218250 - 3218403
Alignment:
| Q |
19 |
agccagatatcaagttttcaaaagcatctttagccaccgtaactttttccaattcaagacttttcaagttcatgaagccttcaaacatcgttggaggttt |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||| ||||| | | | ||||||||||||||||||| ||||||||| |||| | |||||||||| |
|
|
| T |
3218250 |
agccggatatcaagttttcaaaagcatcttgagccattgtaacctgatatagttcaagacttttcaagttcttgaagcctttaaacgttgttggaggttg |
3218349 |
T |
|
| Q |
119 |
aagcgaagaacaatacaaatttaaatgatgtaaactttgacaagagaataagca |
172 |
Q |
| |
|
|| || |||| | || ||||||| |||||||||||||| ||||| ||||| |
|
|
| T |
3218350 |
aatacaacaacagtctaattttaaattctgtaaactttgacatgagaacaagca |
3218403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 408 - 500
Target Start/End: Complemental strand, 2006362 - 2006270
Alignment:
| Q |
408 |
gcagatacacattgtttatcgaacacaagatccggttgtgtggaccattttttcctccatttgttagataaaacacttgttctccctgcttcc |
500 |
Q |
| |
|
||||| |||||||||||||| |||||||||| ||| ||||| |||||| | |||||||||||| |||||||||||||||||| | |||||| |
|
|
| T |
2006362 |
gcagagacacattgtttatcaaacacaagatttggtattgtggcccatttgtacctccatttgttggataaaacacttgttctcacagcttcc |
2006270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 301 - 357
Target Start/End: Complemental strand, 2019777 - 2019721
Alignment:
| Q |
301 |
aatcagagatcttgaacttgttgattggcccagaatgaagtaaaagtacatggtcaa |
357 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||| ||||||||||||||| |||| |
|
|
| T |
2019777 |
aatcagagagcttgaacttgttgattggcccggaataaagtaaaagtacatgatcaa |
2019721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 187
Target Start/End: Complemental strand, 2010842 - 2010663
Alignment:
| Q |
8 |
aagcaaaggggagccagatatcaagttttcaaaagcatctttagccaccgtaactttttccaattcaagacttttcaagttcatgaagccttcaaacatc |
107 |
Q |
| |
|
|||||||||| | ||| ||| ||| || ||||||||||||| || || |||| | ||||| |||||||||||||||||| | |||||| ||| || |
|
|
| T |
2010842 |
aagcaaagggcaaccaaataacaaattctcaaaagcatcttgagacatagtaaagtgatccaactcaagacttttcaagttcttaaagcctacaattgtc |
2010743 |
T |
|
| Q |
108 |
gttggaggtttaagcgaagaacaatacaaatttaaatgatgtaaactttgacaagagaataagcagcaaggtatgttata |
187 |
Q |
| |
|
| ||||||||||||| || | || | ||| ||| |||| |||| ||||||||||| |||||||| |||||||| ||||| |
|
|
| T |
2010742 |
gatggaggtttaagcaaaccataagataaacttagatgaagtaagctttgacaagaaaataagcaccaaggtatcttata |
2010663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 305 - 355
Target Start/End: Complemental strand, 2011970 - 2011920
Alignment:
| Q |
305 |
agagatcttgaacttgttgattggcccagaatgaagtaaaagtacatggtc |
355 |
Q |
| |
|
||||| |||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
2011970 |
agagagcttgaacttgttgattggcccataataaagtaaaagtacatggtc |
2011920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 401
Target Start/End: Complemental strand, 3378726 - 3378649
Alignment:
| Q |
324 |
attggcccagaatgaagtaaaagtacatggtcaacagtcctcacaaacttgttctcgataacagaagggtcttcggaa |
401 |
Q |
| |
|
||||||||||||||||||||||||||||| || | | | |||| ||||||| |||||||||| |||||| ||| |||| |
|
|
| T |
3378726 |
attggcccagaatgaagtaaaagtacatgatcgataattctcaaaaacttgctctcgataaccgaagggccttgggaa |
3378649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 2006471 - 2006427
Alignment:
| Q |
305 |
agagatcttgaacttgttgattggcccagaatgaagtaaaagtac |
349 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2006471 |
agagatctggaacttgttgattggcccagaataaagtaaaagtac |
2006427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 359
Target Start/End: Original strand, 4335023 - 4335077
Alignment:
| Q |
305 |
agagatcttgaacttgttgattggcccagaatgaagtaaaagtacatggtcaaca |
359 |
Q |
| |
|
||||| ||||||| |||||||||| |||||||||| |||||||||||| |||||| |
|
|
| T |
4335023 |
agagaacttgaacatgttgattggtccagaatgaactaaaagtacatgatcaaca |
4335077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 491
Target Start/End: Complemental strand, 2019641 - 2019596
Alignment:
| Q |
446 |
tgtggaccattttttcctccatttgttagataaaacacttgttctc |
491 |
Q |
| |
|
||||| |||||| | |||||||||||| |||||||||||||||||| |
|
|
| T |
2019641 |
tgtggcccatttgtacctccatttgttggataaaacacttgttctc |
2019596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 6592373 - 6592426
Alignment:
| Q |
140 |
taaatgatgtaaactttgacaagagaataagcagcaaggtatgttatagcgttg |
193 |
Q |
| |
|
||||||||| |||||||||||||| ||||| || ||||||| ||||||||||| |
|
|
| T |
6592373 |
taaatgatgcaaactttgacaagaaaataaccatgaaggtattttatagcgttg |
6592426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 6592526 - 6592578
Alignment:
| Q |
305 |
agagatcttgaacttgttgattggcccagaatgaagtaaaagtacatggtcaa |
357 |
Q |
| |
|
||||| ||||||||| |||||||| |||||| | |||||||||||||| |||| |
|
|
| T |
6592526 |
agagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaa |
6592578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 25 - 556
Target Start/End: Complemental strand, 21237826 - 21237295
Alignment:
| Q |
25 |
atatcaagttttcaaaagcatctttagccaccgtaactttttccaattcaagacttttcaagttcatgaagccttcaaacatcgttggaggtttaagcga |
124 |
Q |
| |
|
||||||||||||| |||||||||| || || ||||||| ||| |||||||| ||||||| |||||||||||||| | ||||||||||||||| | |
|
|
| T |
21237826 |
atatcaagttttcgaaagcatcttgagtcattgtaacttcgatcaaagaaagactttccaagttcctgaagccttcaaacgttgttggaggtttaagcca |
21237727 |
T |
|
| Q |
125 |
agaacaatacaaatttaaatgatgtaaactttgacaagagaataagcagcaaggtatgttatagcgttgctcgaaccaaatgtccagctcaagattttta |
224 |
Q |
| |
|
| ||| || | ||||||||||||||||||||||||||||||||| |||||||| ||||| | |||| | || || |||| | |||| | |||| |
|
|
| T |
21237726 |
acaacttgttaattctaaatgatgtaaactttgacaagagaataagcaccaaggtatcttataactttgccctgtcctgatatccaacacaagttcttta |
21237627 |
T |
|
| Q |
225 |
atagaccttcttgttagatgaagaatccaccgatcaatatcagccacagatttcataccaatgagatcacaaccggaatcagagatcttgaacttgttga |
324 |
Q |
| |
|
|||||||||||| ||| |||||||||||| ||| || |||||| ||| ||||||||||||||| | || ||||||| ||||||| | |
|
|
| T |
21237626 |
atagaccttcttattaaatgaagaatccatcgagcagtatcagttgcaggactcataccaatgagattttgatacttgtcgcagatcttaaacttgtcaa |
21237527 |
T |
|
| Q |
325 |
ttggcccagaatgaagtaaaagtacatggtcaacagtcctcacaaacttgttctcgataacagaagggtcttcggaaactgcagcagatacacattgttt |
424 |
Q |
| |
|
||| |||||||||||||| ||||||||| |||||| | |||| ||||||||| |||| | |||||||||| || |||| |||| ||||| ||||| |
|
|
| T |
21237526 |
ttgacccagaatgaagtagaagtacatgatcaacaattctcaaaaacttgttactgatacctgaagggtcttgaaaagttgcatcagagacacaatgttt |
21237427 |
T |
|
| Q |
425 |
atcgaacacaagatccggttgtgtggaccattttttcctccatttgttagataaaacacttgttctccctgcttccttgattgacaggcgtgaaagaata |
524 |
Q |
| |
|
|||||||||||||| || ||| ||||||| || ||||||||| | ||||| |||||||||||| ||||||||| |||| || | || | ||||| |
|
|
| T |
21237426 |
atcgaacacaagatttggcatagtgtaccatttgtttctccatttgctggataatacacttgttctcaatgcttccttaattggcaagtgtaagagaatc |
21237327 |
T |
|
| Q |
525 |
cggtctattatatgatctggtaagcaactaat |
556 |
Q |
| |
|
||||| ||| || | |||||||| ||||||| |
|
|
| T |
21237326 |
tggtctgttacattacctggtaaggaactaat |
21237295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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