View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19930_low_7 (Length: 549)
Name: NF19930_low_7
Description: NF19930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19930_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 63 - 531
Target Start/End: Original strand, 39036384 - 39036850
Alignment:
| Q |
63 |
cttgtacatgttgcatgaatttgtatctccttatgcacattacacaaaacatgagttgtatccttatcaatttaatcaaatttcatttgtccaaacattt |
162 |
Q |
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| T |
39036384 |
cttgtacatgttgcatgaatttgtatctccttatgcacattacacaaaacatgagttgtatccttatcaatttaatcaaatttcatttgtccaaacattt |
39036483 |
T |
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| Q |
163 |
aattattgattggctgcaaaacattactattattttattaaaattagccatcgcattaaattttccctccttatgtctcaataatggagataggaaagag |
262 |
Q |
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| T |
39036484 |
aattattgattggctgcaaaacattactattattttattaaaattagccatcgcattaaattttccctccttatgtctcaataatggagataggaaagag |
39036583 |
T |
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| Q |
263 |
caagaaggttgctatcactgaatgatacttagaggctgtgatccttaagttaggaattataattaaagtcgattgagacataaacatagtagtacgtacc |
362 |
Q |
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| T |
39036584 |
caagaaggttgctatcactgaatgatacttagatgccgtgatccttaagttaggaattataattaaagtcgattgagacataaatatagtagtacgtacc |
39036683 |
T |
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| Q |
363 |
atgcaatataattcagctcccctaaggtagcaatattaatacagagttacatagacnnnnnnngagaatgttttatttaatttcactggatacacaacaa |
462 |
Q |
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| T |
39036684 |
atgcaatataattcagctcccctaaggtagcaatat--atacagagttacatagacaaaaaaagagaatgttttatttaatttcactggatacacaacaa |
39036781 |
T |
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| Q |
463 |
cgttatgaatttaacaaccagatggagaaagagttatgataacccttatgagtgatggtgtggtgttag |
531 |
Q |
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| T |
39036782 |
cgttatgaatttaacaaccagatggagaaagagttatgataacccttatgagtgatggtgtggtgttag |
39036850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 39036337 - 39036372
Alignment:
| Q |
7 |
gtgagatgaagcggcttattcatttaatgggagaaa |
42 |
Q |
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| T |
39036337 |
gtgatatgaagcggcttattcatttaatgggagaaa |
39036372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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