View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19930_low_8 (Length: 548)

Name: NF19930_low_8
Description: NF19930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19930_low_8
NF19930_low_8
[»] chr6 (5 HSPs)
chr6 (216-461)||(4183706-4183951)
chr6 (216-461)||(4744545-4744790)
chr6 (461-530)||(4183610-4183679)
chr6 (462-530)||(4744451-4744520)
chr6 (97-146)||(2332690-2332739)
[»] chr1 (8 HSPs)
chr1 (304-461)||(51382140-51382297)
chr1 (265-461)||(51857762-51857958)
chr1 (347-456)||(51221896-51222005)
chr1 (347-399)||(51763692-51763744)
chr1 (355-436)||(25611720-25611801)
chr1 (304-461)||(51781991-51782148)
chr1 (377-441)||(45693604-45693668)
chr1 (484-520)||(51763538-51763574)
[»] scaffold0244 (1 HSPs)
scaffold0244 (109-171)||(16291-16353)
[»] scaffold0171 (1 HSPs)
scaffold0171 (94-171)||(723-800)
[»] scaffold0015 (1 HSPs)
scaffold0015 (311-396)||(41147-41232)


Alignment Details
Target: chr6 (Bit Score: 150; Significance: 5e-79; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 216 - 461
Target Start/End: Complemental strand, 4183951 - 4183706
Alignment:
Q  216 ttgatatgacgacgacgacagattgcaaacgaggaggaacctcaaccaaaaccctaacaccactgcctcccaccaactctcctccatttcttccatttga 315  Q
    ||||||||||||||| ||||| | |||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| || |||||||| ||    
T  4183951 ttgatatgacgacgatgacaggtcgcaaacgaggaggaacctcaaccagaaccctaacacaactgcctcccactaactctcctccgttacttccattcga 4183852  T
Q  316 tcttgtggcagaaatcttatcccttctccctgtgaaacacctccttaaactcagttgcgtttgcaagtcatggaattctcttatttccattgattccaaa 415  Q
    |||||||||||||||| ||| |  |||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||| |||  ||||||||||    
T  4183851 tcttgtggcagaaatcctatgctgtctccctgtgaaacacctccttcaactccgttgcgtttgcaagtcctggaattctcttatctcccatgattccaaa 4183752  T
Q  416 tttgccatgaagcaccttcgcctgtccacctccaaccacgaccgcc 461  Q
    || |||| ||| ||||||||  ||||||||||||||||||||||||    
T  4183751 ttcgccaagaaccaccttcgtttgtccacctccaaccacgaccgcc 4183706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 216 - 461
Target Start/End: Complemental strand, 4744790 - 4744545
Alignment:
Q  216 ttgatatgacgacgacgacagattgcaaacgaggaggaacctcaaccaaaaccctaacaccactgcctcccaccaactctcctccatttcttccatttga 315  Q
    ||||||||||||||| ||||| | |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| || |||||||| ||    
T  4744790 ttgatatgacgacgatgacaggtcgcaaacgaggaggaacctcaaccagaaccctaacaccactgcctcccactaactctcctccgttacttccattcga 4744691  T
Q  316 tcttgtggcagaaatcttatcccttctccctgtgaaaca-cctccttaaactcagttgcgtttgcaagtcatggaattctcttatttccattgattccaa 414  Q
    |||||||||||||||| | | |  ||||||||||||||| ||||||| ||||| |||||||||||||||| | |||||||||||| |||  |||||||||    
T  4744690 tcttgtggcagaaatcctctgctgtctccctgtgaaacaccctccttcaactccgttgcgtttgcaagtcct-gaattctcttatctcccatgattccaa 4744592  T
Q  415 atttgccatgaagcaccttcgcctgtccacctccaaccacgaccgcc 461  Q
    ||| |||| ||| ||||||||  ||||||||||||||||||||||||    
T  4744591 attcgccaagaaccaccttcgtttgtccacctccaaccacgaccgcc 4744545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 461 - 530
Target Start/End: Complemental strand, 4183679 - 4183610
Alignment:
Q  461 cccttgttccacttatctggatgctcaatctcctctatttttagttccgccacatcctttaccagtttca 530  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  4183679 cccttgttctacttatctggatgctcaatctcctctattttcagttccgctgcatcctttaccagtttca 4183610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 462 - 530
Target Start/End: Complemental strand, 4744520 - 4744451
Alignment:
Q  462 ccttgttccacttatctgg-atgctcaatctcctctatttttagttccgccacatcctttaccagtttca 530  Q
    |||||||| |||||||||| |||| |||||||||||||||| ||||| ||  ||||||||||||||||||    
T  4744520 ccttgttctacttatctgggatgcccaatctcctctattttcagttctgctgcatcctttaccagtttca 4744451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 2332739 - 2332690
Alignment:
Q  97 ggaatgaaagaactttaaagagggccaatagaatcatccaagaaaggtct 146  Q
    ||||||||||| || | |||||| |||||| |||||||||||||||||||    
T  2332739 ggaatgaaagagctgtgaagaggaccaataaaatcatccaagaaaggtct 2332690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 304 - 461
Target Start/End: Complemental strand, 51382297 - 51382140
Alignment:
Q  304 tcttccatttgatcttgtggcagaaatcttatcccttctccctgtgaaacacctccttaaactcagttgcgtttgcaagtcatggaattctcttatttcc 403  Q
    |||||| || ||||| |||||||||||| | | ||| ||||| ||||||||||||||| ||||| ||||||| |||||||||||||||| |||||| ||     
T  51382297 tcttccgttcgatctggtggcagaaatcctgtgcctgctccccgtgaaacacctccttcaactccgttgcgtctgcaagtcatggaattatcttatctct 51382198  T
Q  404 attgattccaaatttgccatgaagcaccttcgcctgtccacctccaaccacgaccgcc 461  Q
      ||||||||| || |||| |||||| |||||  |||| |||||||||||||||||||    
T  51382197 catgattccaatttcgccaagaagcaacttcgtttgtcaacctccaaccacgaccgcc 51382140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 265 - 461
Target Start/End: Original strand, 51857762 - 51857958
Alignment:
Q  265 aaccctaacaccactgcctcccaccaactctcctccatttcttccatttgatcttgtggcagaaatcttatcccttctccctgtgaaacacctccttaaa 364  Q
    ||||| |||||||| |||||| ||||| |||| |||||||||| | || ||||| ||| |||||||  | | ||  ||||| |||||| | |||||| ||    
T  51857762 aacccaaacaccaccgcctcctaccaattctcttccatttctttcgttcgatctcgtgacagaaattctgtgccagctccccgtgaaaaatctccttcaa 51857861  T
Q  365 ctcagttgcgtttgcaagtcatggaattctcttatttccattgattccaaatttgccatgaagcaccttcgcctgtccacctccaaccacgaccgcc 461  Q
    ||| ||||| | ||||||||||||||||||||||| ||   ||||||| ||||  | ||||||||||||||| |||| |||||||||| ||||||||    
T  51857862 ctccgttgcatctgcaagtcatggaattctcttatctctcatgattccgaattcactatgaagcaccttcgcttgtcaacctccaacctcgaccgcc 51857958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 456
Target Start/End: Complemental strand, 51222005 - 51221896
Alignment:
Q  347 gtgaaacacctccttaaactcagttgcgtttgcaagtcatggaattctcttatttccattgattccaaatttgccatgaagcaccttcgcctgtccacct 446  Q
    |||||||||||| || ||||| | ||| | ||||||||||||||||||||||| ||   |||||  || ||||||| |||||| |||||| |||| ||||    
T  51222005 gtgaaacacctcattcaactccgctgcatctgcaagtcatggaattctcttatctctcatgatttaaattttgccaagaagcaacttcgcttgtcaacct 51221906  T
Q  447 ccaaccacga 456  Q
     |||||||||    
T  51221905 tcaaccacga 51221896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 399
Target Start/End: Complemental strand, 51763744 - 51763692
Alignment:
Q  347 gtgaaacacctccttaaactcagttgcgtttgcaagtcatggaattctcttat 399  Q
    |||||||| |||||| ||||| ||||||| |||||||||||||||||||||||    
T  51763744 gtgaaacatctccttcaactctgttgcgtctgcaagtcatggaattctcttat 51763692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 436
Target Start/End: Complemental strand, 25611801 - 25611720
Alignment:
Q  355 cctccttaaactcagttgcgtttgcaagtcatggaattctcttatttccattgattccaaatttgccatgaagcaccttcgc 436  Q
    ||||||| || || ||||||| |||||||||||||||||||| || || | |||| |||| |||| || ||| |||||||||    
T  25611801 cctccttcaattctgttgcgtctgcaagtcatggaattctctaatatcgaatgatcccaattttgtcaagaaacaccttcgc 25611720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 461
Target Start/End: Original strand, 51781991 - 51782148
Alignment:
Q  304 tcttccatttgatcttgtggcagaaatcttatcccttctccctgtgaaacacctccttaaactcagttgcgtttgcaagtcatggaattctcttatttcc 403  Q
    |||||| || ||||| || ||||||||| | |  || ||||| |||||||| ||| |||||||| |  | || || |||||||||||||||||||| |||    
T  51781991 tcttccgttcgatctggttgcagaaatcctgtgtctgctccccgtgaaacatctcattaaactccgccgtgtctgtaagtcatggaattctcttatctcc 51782090  T
Q  404 attgattccaaatttgccatgaagcaccttcgcctgtccacctccaaccacgaccgcc 461  Q
      |||||| ||||| || |  || ||| ||||| |||| ||||| |||||||| ||||    
T  51782091 catgattctaaattcgctaaaaaacactttcgcttgtcaacctctaaccacgatcgcc 51782148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 441
Target Start/End: Complemental strand, 45693668 - 45693604
Alignment:
Q  377 tgcaagtcatggaattctcttatttccattgattccaaatttgccatgaagcaccttcgcctgtc 441  Q
    |||||||| ||||||||||| || || |||||| |||||||||| | ||| ||||||||| ||||    
T  45693668 tgcaagtcgtggaattctctaatctcaattgatcccaaatttgctaagaatcaccttcgcatgtc 45693604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 520
Target Start/End: Complemental strand, 51763574 - 51763538
Alignment:
Q  484 ctcaatctcctctatttttagttccgccacatccttt 520  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  51763574 ctcaatctcctctattttcagttccgccgcatccttt 51763538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 16291 - 16353
Alignment:
Q  109 ctttaaagagggccaatagaatcatccaagaaaggtctaatacgtctgactagcactttggaa 171  Q
    |||| ||||||||||||| ||||||||||||||||||||||||| || ||||| |||||||||    
T  16291 ctttgaagagggccaataaaatcatccaagaaaggtctaatacgcctaactagtactttggaa 16353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 94 - 171
Target Start/End: Original strand, 723 - 800
Alignment:
Q  94 ttaggaatgaaagaactttaaagagggccaatagaatcatccaagaaaggtctaatacgtctgactagcactttggaa 171  Q
    ||||||||||||||  |||  |||||||||||| ||||||||||||||||| | |||| ||| || || |||||||||    
T  723 ttaggaatgaaagagttttggagagggccaataaaatcatccaagaaaggtttgatacatctcacaagaactttggaa 800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 311 - 396
Target Start/End: Complemental strand, 41232 - 41147
Alignment:
Q  311 tttgatcttgtggcagaaatcttatcccttctccctgtgaaacacctccttaaactcagttgcgtttgcaagtcatggaattctct 396  Q
    |||||||||||||| |||||| |||  |  ||||||||||||  ||||||  || || ||||||| ||||||||||||||||||||    
T  41232 tttgatcttgtggctgaaatcctatgtcgactccctgtgaaattcctcctacaattccgttgcgtctgcaagtcatggaattctct 41147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University