View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19930_low_9 (Length: 527)

Name: NF19930_low_9
Description: NF19930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19930_low_9
NF19930_low_9
[»] chr3 (2 HSPs)
chr3 (18-520)||(45382403-45382906)
chr3 (363-409)||(47362558-47362604)
[»] chr6 (12 HSPs)
chr6 (334-414)||(27661703-27661783)
chr6 (377-414)||(26650237-26650274)
chr6 (377-414)||(26756205-26756242)
chr6 (378-418)||(12627824-12627864)
chr6 (374-414)||(29449688-29449728)
chr6 (439-489)||(8148268-8148318)
chr6 (433-486)||(20809178-20809231)
chr6 (385-414)||(28783014-28783043)
chr6 (375-432)||(34057962-34058019)
chr6 (452-488)||(29670971-29671007)
chr6 (375-411)||(30537508-30537544)
chr6 (438-486)||(31811989-31812037)
[»] chr7 (4 HSPs)
chr7 (374-414)||(43160491-43160531)
chr7 (376-423)||(10893872-10893919)
chr7 (372-414)||(650524-650566)
chr7 (378-414)||(18750887-18750923)
[»] chr5 (4 HSPs)
chr5 (375-414)||(28136673-28136712)
chr5 (377-414)||(645342-645379)
chr5 (378-423)||(11601688-11601733)
chr5 (438-486)||(12478334-12478382)
[»] chr8 (4 HSPs)
chr8 (439-481)||(14229600-14229642)
chr8 (374-414)||(32691750-32691790)
chr8 (375-423)||(41686804-41686852)
chr8 (375-423)||(31681833-31681881)
[»] chr2 (1 HSPs)
chr2 (372-468)||(9956949-9957045)
[»] chr4 (4 HSPs)
chr4 (364-414)||(10164460-10164510)
chr4 (376-414)||(28890768-28890806)
chr4 (382-418)||(29388374-29388410)
chr4 (374-414)||(45615427-45615467)
[»] chr1 (3 HSPs)
chr1 (378-423)||(264615-264660)
chr1 (434-474)||(27835482-27835522)
chr1 (378-414)||(43609830-43609866)


Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 520
Target Start/End: Original strand, 45382403 - 45382906
Alignment:
Q  18 atttataataccaaataatatgttaataggaaactttgtctttgatacagcacatgggtgataatgaatagagaaacaagaagactatcaaagatacctg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45382403 atttataataccaaataatatgttaataggaaactttgtctttgatacagcacatgggtgataatgaatagagaaacaagaagactatcaaagatacctg 45382502  T
Q  118 aagaagttagaaaagagcttactcctttttaccttcataagattgctgtagctagtgaagaaagagattgtgaaaagatagacaagctcactgatgacac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45382503 aagaagttagaaaagagcttactcctttttaccttcataagattgctgtagctagtgaagaaagagattgtgaaaagatagacaagctcactgatgacac 45382602  T
Q  218 tgctgagagaatacaatctggtttggctgtaagtttatttcatacctgatttataagtttatttttccactcatttttcattatctatgaagcactgaca 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||      
T  45382603 tgctgagagaatacaatctggtttggctgtaagtttatttcatacctgatttataagtttatttttccactcatttttcgttatctatgaagcactga-- 45382700  T
Q  318 tgaacaccagagacatgaacaccggactccacactgacactcattcgtcaacatcagtagtaatttaagaaaataacatatttgaatgtaatcacat--- 414  Q
            |||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  45382701 -------gagagacatgaacactggacttcacactgacattcattcgtcaacatcagtagtaatttaagaaaataacatatttgaatgtaatcacatatg 45382793  T
Q  415 --------atgttggtgacagacacagacaaatgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaagttcattatttaccaattagt 506  Q
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||    
T  45382794 tcggtgacatgttggtgtcagacacagacaaatgtcggacaccggacatgccttcgatcagaagtat-tgtgctacaaagttcattatttaccaattagt 45382892  T
Q  507 cacttcctttgctt 520  Q
    || |||||||||||    
T  45382893 caattcctttgctt 45382906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 363 - 409
Target Start/End: Original strand, 47362558 - 47362604
Alignment:
Q  363 cgtcaacatcagtagtaatttaagaaaataacatatttgaatgtaat 409  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||    
T  47362558 cgtcaacatcagtaataatttaagaaaattacataattgaatgtaat 47362604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 334 - 414
Target Start/End: Original strand, 27661703 - 27661783
Alignment:
Q  334 gaacaccggactccacactgacactcattcgtcaacatcagtagtaatttaagaaaataacatatttgaatgtaatcacat 414  Q
    |||||||| |||| ||||| ||||| ||||||||||||   ||||||||||||||||||| |||||| |||||||||||||    
T  27661703 gaacaccgaactcgacactaacactgattcgtcaacattgatagtaatttaagaaaataatatatttcaatgtaatcacat 27661783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 377 - 414
Target Start/End: Complemental strand, 26650274 - 26650237
Alignment:
Q  377 gtaatttaagaaaataacatatttgaatgtaatcacat 414  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26650274 gtaatttaagaaaataacatatttgaatgtaatcacat 26650237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 377 - 414
Target Start/End: Complemental strand, 26756242 - 26756205
Alignment:
Q  377 gtaatttaagaaaataacatatttgaatgtaatcacat 414  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26756242 gtaatttaagaaaataacatatttgaatgtaatcacat 26756205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 418
Target Start/End: Complemental strand, 12627864 - 12627824
Alignment:
Q  378 taatttaagaaaataacatatttgaatgtaatcacatatgt 418  Q
    ||||||||||||||||||||||| |||||||||| ||||||    
T  12627864 taatttaagaaaataacatatttcaatgtaatcatatatgt 12627824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 29449688 - 29449728
Alignment:
Q  374 gtagtaatttaagaaaataacatatttgaatgtaatcacat 414  Q
    |||||||||| ||||||||||||| ||||||||||||||||    
T  29449688 gtagtaatttcagaaaataacataattgaatgtaatcacat 29449728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 439 - 489
Target Start/End: Complemental strand, 8148318 - 8148268
Alignment:
Q  439 tgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaagttc 489  Q
    ||||||||||| ||||||||||| ||| |||||||| |||||||| |||||    
T  8148318 tgtcggacaccagacatgccttccatcggaaatgtcggtgctacatagttc 8148268  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 486
Target Start/End: Complemental strand, 20809231 - 20809178
Alignment:
Q  433 gacaaatgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaag 486  Q
    |||| ||||||||||||||||||||||||||||  || ||||  ||||||||||    
T  20809231 gacacatgtcggacaccggacatgccttcgatccaaagtgtcgatgctacaaag 20809178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 414
Target Start/End: Complemental strand, 28783043 - 28783014
Alignment:
Q  385 agaaaataacatatttgaatgtaatcacat 414  Q
    ||||||||||||||||||||||||||||||    
T  28783043 agaaaataacatatttgaatgtaatcacat 28783014  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 432
Target Start/End: Original strand, 34057962 - 34058019
Alignment:
Q  375 tagtaatttaagaaaataacatatttgaatgtaatcacatatgttggtgacagacaca 432  Q
    ||||||| ||||||||| ||||| |||| ||||||||||| ||| |||| ||||||||    
T  34057962 tagtaatataagaaaatgacataattgactgtaatcacatgtgtcggtgtcagacaca 34058019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 452 - 488
Target Start/End: Original strand, 29670971 - 29671007
Alignment:
Q  452 acatgccttcgatcagaaatgtctgtgctacaaagtt 488  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  29670971 acatgccttcgatcagaaatgtcggtggtacaaagtt 29671007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 411
Target Start/End: Original strand, 30537508 - 30537544
Alignment:
Q  375 tagtaatttaagaaaataacatatttgaatgtaatca 411  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  30537508 tagtaatttaagaaaataacataattgaatgttatca 30537544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 486
Target Start/End: Original strand, 31811989 - 31812037
Alignment:
Q  438 atgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaag 486  Q
    ||||||||||| ||||||||||| |||||||  |||| |||||||||||    
T  31811989 atgtcggacactggacatgcctttgatcagaggtgtcagtgctacaaag 31812037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 43160491 - 43160531
Alignment:
Q  374 gtagtaatttaagaaaataacatatttgaatgtaatcacat 414  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  43160491 gtagtaatttaagaaaataacataattgaatgtaatcacat 43160531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 423
Target Start/End: Complemental strand, 10893919 - 10893872
Alignment:
Q  376 agtaatttaagaaaataacatatttgaatgtaatcacatatgttggtg 423  Q
    |||||||||||||||| ||||| |||||||||||||||| ||||||||    
T  10893919 agtaatttaagaaaatgacataattgaatgtaatcacatgtgttggtg 10893872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 414
Target Start/End: Original strand, 650524 - 650566
Alignment:
Q  372 cagtagtaatttaagaaaataacatatttgaatgtaatcacat 414  Q
    |||||||||||||||||||| ||||| ||||||| ||||||||    
T  650524 cagtagtaatttaagaaaatgacataattgaatgcaatcacat 650566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 18750887 - 18750923
Alignment:
Q  378 taatttaagaaaataacatatttgaatgtaatcacat 414  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  18750887 taatttaagaaaatgacataattgaatgtaatcacat 18750923  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 375 - 414
Target Start/End: Original strand, 28136673 - 28136712
Alignment:
Q  375 tagtaatttaagaaaataacatatttgaatgtaatcacat 414  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  28136673 tagtaatttaagaaaataacatatttcaatgtaatcacat 28136712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 414
Target Start/End: Original strand, 645342 - 645379
Alignment:
Q  377 gtaatttaagaaaataacatatttgaatgtaatcacat 414  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  645342 gtaatttaagaaaatgacataattgaatgtaatcacat 645379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 423
Target Start/End: Original strand, 11601688 - 11601733
Alignment:
Q  378 taatttaagaaaataacatatttgaatgtaatcacatatgttggtg 423  Q
    |||||||||||| |||  || |||||||||||||||||||||||||    
T  11601688 taatttaagaaactaaattaattgaatgtaatcacatatgttggtg 11601733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 438 - 486
Target Start/End: Original strand, 12478334 - 12478382
Alignment:
Q  438 atgtcggacaccggacatgccttcgatcagaaatgtctgtgctacaaag 486  Q
    ||||| |||||| |||| |||||| |||||||||||| |||||||||||    
T  12478334 atgtcagacaccagacacgccttccatcagaaatgtcggtgctacaaag 12478382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 439 - 481
Target Start/End: Original strand, 14229600 - 14229642
Alignment:
Q  439 tgtcggacaccggacatgccttcgatcagaaatgtctgtgcta 481  Q
    ||||||||||||||||||||||||||||||| |||| ||||||    
T  14229600 tgtcggacaccggacatgccttcgatcagaagtgtcagtgcta 14229642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 414
Target Start/End: Original strand, 32691750 - 32691790
Alignment:
Q  374 gtagtaatttaagaaaataacatatttgaatgtaatcacat 414  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  32691750 gtagtaatttaagaaaatgacataattgaatgtaatcacat 32691790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 423
Target Start/End: Complemental strand, 41686852 - 41686804
Alignment:
Q  375 tagtaatttaagaaaataacatatttgaatgtaatcacatatgttggtg 423  Q
    ||||||||||||||||||||||| |||| | ||||||||| ||||||||    
T  41686852 tagtaatttaagaaaataacatagttgagtctaatcacatgtgttggtg 41686804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 423
Target Start/End: Complemental strand, 31681881 - 31681833
Alignment:
Q  375 tagtaatttaagaaaataacatatttgaatgtaatcacatatgttggtg 423  Q
    ||||||||||||||||| ||||| ||||||| |||||||| ||| ||||    
T  31681881 tagtaatttaagaaaatgacataattgaatgaaatcacatgtgtcggtg 31681833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 468
Target Start/End: Complemental strand, 9957045 - 9956949
Alignment:
Q  372 cagtagtaatttaagaaaataacatatttgaatgtaatcacatatgttggtgacagacacagacaaatgtcggacaccggacatgccttcgatcaga 468  Q
    ||||| |||||| | |||||||  |||||||| ||||| |||| |||  ||| | ||||| |||| ||||| ||||||||||||||||| |||||||    
T  9957045 cagtaataatttgacaaaataaattatttgaacgtaatgacatgtgtccgtgccggacaccgacacatgtcagacaccggacatgcctttgatcaga 9956949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 414
Target Start/End: Original strand, 10164460 - 10164510
Alignment:
Q  364 gtcaacatcagtagtaatttaagaaaataacatatttgaatgtaatcacat 414  Q
    ||||||| | ||||||||||||||||||  |||| ||||||||||||||||    
T  10164460 gtcaacaccggtagtaatttaagaaaatggcataattgaatgtaatcacat 10164510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 376 - 414
Target Start/End: Original strand, 28890768 - 28890806
Alignment:
Q  376 agtaatttaagaaaataacatatttgaatgtaatcacat 414  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  28890768 agtaatttaagaaaataacataattgaatgcaatcacat 28890806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 29388410 - 29388374
Alignment:
Q  382 ttaagaaaataacatatttgaatgtaatcacatatgt 418  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  29388410 ttaagaaaatgacataattgaatgtaatcacatatgt 29388374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 414
Target Start/End: Complemental strand, 45615467 - 45615427
Alignment:
Q  374 gtagtaatttaagaaaataacatatttgaatgtaatcacat 414  Q
    |||||||||||||||||| ||||| ||||| ||||||||||    
T  45615467 gtagtaatttaagaaaatgacataattgaacgtaatcacat 45615427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 423
Target Start/End: Original strand, 264615 - 264660
Alignment:
Q  378 taatttaagaaaataacatatttgaatgtaatcacatatgttggtg 423  Q
    |||||||||||| ||||||| || ||||||||||||| ||||||||    
T  264615 taatttaagaaagtaacatacttaaatgtaatcacatgtgttggtg 264660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 434 - 474
Target Start/End: Original strand, 27835482 - 27835522
Alignment:
Q  434 acaaatgtcggacaccggacatgccttcgatcagaaatgtc 474  Q
    |||||||||||||||| ||||||||||| ||||||| ||||    
T  27835482 acaaatgtcggacaccagacatgccttcaatcagaagtgtc 27835522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 43609866 - 43609830
Alignment:
Q  378 taatttaagaaaataacatatttgaatgtaatcacat 414  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  43609866 taatttgagaaaataacataattgaatgtaatcacat 43609830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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