View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19931_high_3 (Length: 353)
Name: NF19931_high_3
Description: NF19931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19931_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 22 - 336
Target Start/End: Complemental strand, 15237336 - 15237022
Alignment:
| Q |
22 |
ttttggataatggaaattagagagatataatatactacctgtaggagctgtttggcaaggtcaatagagataagaccagcactacaacccataccaccaa |
121 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15237336 |
ttttggattatggaaattagagagatataatatactacctgtaggagctgtttggcaaggtcaatagagataagaccagcactacaacccataccaccaa |
15237237 |
T |
|
| Q |
122 |
gattataactcaagatatttcctctcaacttataatgattcacaatcatggcagaaagagatggtgttggattaaacaaactacaattcacaaccaaaat |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15237236 |
gattataactcaagatatttcctctcaacttataatgattcacaatcatggcagaaagagatggtgttggattaaacaaactacaattcacaaccaaaat |
15237137 |
T |
|
| Q |
222 |
cccaatatccttagccttcacaccagttttttgaagaacctcatcaatagcaccaaacataacctcttcagcttctttccttgcttcagccatacatgga |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15237136 |
cccaatatccttagccttcacaccagttttttgaagaacctcatcaatagcaccaaacataacctcttcagcttctttccttgcttcagccatacatgga |
15237037 |
T |
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| Q |
322 |
ttaggtgggaccctc |
336 |
Q |
| |
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| T |
15237036 |
ttaggtgggaccctc |
15237022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 57 - 329
Target Start/End: Complemental strand, 34052130 - 34051858
Alignment:
| Q |
57 |
tacctgtaggagctgtttggcaaggtcaatagagataagaccagcactacaacccataccaccaagattataactcaagatatttcctctcaacttataa |
156 |
Q |
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||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||| ||||| ||||||||| |
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| T |
34052130 |
tacctgtaggagctgcttagcaaggtcaatagagataagtccagcactacaacccataccaccaagattataactttgaacattccctcttaacttataa |
34052031 |
T |
|
| Q |
157 |
tgattcacaatcatggcagaaagagatggtgttggattaaacaaactacaattcacaaccaaaatcccaatatccttagccttcacaccagttttttgaa |
256 |
Q |
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|||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | | |
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| T |
34052030 |
tgattcacaatcatagcagaaagagaaggtgtaggattaaacaaactacaattcacaaccaaaatcccaatatccttagccttaacaccagttttctcca |
34051931 |
T |
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| Q |
257 |
gaacctcatcaatagcaccaaacataacctcttcagcttctttccttgcttcagccatacatggattaggtgg |
329 |
Q |
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| T |
34051930 |
aaagctcatcaatagcaccaaacataacttcctcagcttctttccttgcttcagccatacaaggatttggtgg |
34051858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 31197740 - 31197688
Alignment:
| Q |
76 |
gcaaggtcaatagagataagaccagcactacaacccataccaccaagattata |
128 |
Q |
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| T |
31197740 |
gcaagatcaattgaaataagaccagcactacaacccatacctccaagattata |
31197688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 97 - 194
Target Start/End: Complemental strand, 48670739 - 48670642
Alignment:
| Q |
97 |
ccagcactacaacccataccaccaagattataactcaagatatttcctctcaacttataatgattcacaatcatggcagaaagagatggtgttggatt |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||| | ||||||||| || | |||||||||||||| |
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| T |
48670739 |
ccagcactacaacccataccaccaagattataactcaaaatatttcccctcatcttataatgatttataatcatggctgacaatgatggtgttggatt |
48670642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 215
Target Start/End: Original strand, 49041796 - 49041935
Alignment:
| Q |
76 |
gcaaggtcaatagagataagaccagcactacaacccataccaccaagattataactcaagatatttcctctcaacttataatgattcacaatcatggcag |
175 |
Q |
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||||| ||||| || |||||||||||||||||||||||||| || |||||||| || || ||| ||| | ||| ||||| ||||||||||| |||| |
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| T |
49041796 |
gcaagatcaattgaaataagaccagcactacaacccatacctccgagattatagcttttaatgtttgttctaagcttgtaatggttcacaatcattgcag |
49041895 |
T |
|
| Q |
176 |
aaagagatggtgttggattaaacaaactacaattcacaac |
215 |
Q |
| |
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|||| || || ||||| ||||||||||||||||| ||||| |
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| T |
49041896 |
aaagtgaaggagttgggttaaacaaactacaatttacaac |
49041935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 236
Target Start/End: Complemental strand, 10277471 - 10277326
Alignment:
| Q |
91 |
ataagaccagcactacaacccataccaccaagattataactcaagatatttcctctcaacttataatgattcacaatcatggcagaaagagatggtgttg |
190 |
Q |
| |
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|||| ||||||||| || |||||||||| ||||||||| |||| ||||||||||| | ||||||||||| ||||| | | ||||| |||||||| | |
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| T |
10277471 |
ataacaccagcactgcatcccataccactaagattatagatcaaaatatttcctctaagtttataatgattaacaatagtatctgaaagtgatggtgtag |
10277372 |
T |
|
| Q |
191 |
gattaaacaaactacaattcacaaccaaaatcccaatatccttagc |
236 |
Q |
| |
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||||||| |||| ||||||||| || | ||| |||||||| ||||| |
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| T |
10277371 |
gattaaataaacaacaattcaccacaagaattccaatatctttagc |
10277326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 215
Target Start/End: Complemental strand, 26463997 - 26463858
Alignment:
| Q |
76 |
gcaaggtcaatagagataagaccagcactacaacccataccaccaagattataactcaagatatttcctctcaacttataatgattcacaatcatggcag |
175 |
Q |
| |
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||||| ||||| || |||||||||||||||||||||||||| ||||||||||| || || ||| ||| | ||| | ||| ||||||||||| |||| |
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| T |
26463997 |
gcaagatcaattgaaataagaccagcactacaacccatacctccaagattatagcttttaatgtttgttcttagcttgtcatggttcacaatcattgcag |
26463898 |
T |
|
| Q |
176 |
aaagagatggtgttggattaaacaaactacaattcacaac |
215 |
Q |
| |
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|||| || || ||||| ||| ||||||||||||| ||||| |
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| T |
26463897 |
aaagggaaggagttgggttatacaaactacaatttacaac |
26463858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 215
Target Start/End: Complemental strand, 26452893 - 26452754
Alignment:
| Q |
76 |
gcaaggtcaatagagataagaccagcactacaacccataccaccaagattataactcaagatatttcctctcaacttataatgattcacaatcatggcag |
175 |
Q |
| |
|
||||| ||||||| |||| |||||||||||||||||||||||| | |||| |||| ||||| || || || ||||| | || |||||||| || | |
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| T |
26452893 |
gcaagatcaatagctataacaccagcactacaacccataccacccaaattaaaacttctaatattaccccttaatttatatttgttaacaatcatagctg |
26452794 |
T |
|
| Q |
176 |
aaagagatggtgttggattaaacaaactacaattcacaac |
215 |
Q |
| |
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|||| ||||| ||||||||||||||||||||||| ||||| |
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| T |
26452793 |
aaagtgatggcgttggattaaacaaactacaattaacaac |
26452754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 309
Target Start/End: Original strand, 19678084 - 19678132
Alignment:
| Q |
261 |
ctcatcaatagcaccaaacataacctcttcagcttctttccttgcttca |
309 |
Q |
| |
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|||||||||||||||||| |||||| ||| | |||||||||||||||| |
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|
| T |
19678084 |
ctcatcaatagcaccaaaaataaccgattctgtttctttccttgcttca |
19678132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 227
Target Start/End: Original strand, 23499753 - 23499922
Alignment:
| Q |
58 |
acctgtaggagctgtttggcaaggtcaatagagataagaccagcactacaacccataccaccaagattataactcaagatatttcctctcaacttataat |
157 |
Q |
| |
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||||| || |||| ||| ||||| ||||| || |||| |||||||| || ||||| ||||||||||| ||||||| || || ||||||| |||||| | |
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| T |
23499753 |
acctggagaagctctttagcaagatcaattgaaataatcccagcactgcatcccatcccaccaagattgtaactcattatgttacctctcagcttatagt |
23499852 |
T |
|
| Q |
158 |
gattcacaatcatggcagaaagagatggtgttggattaaacaaactacaattcacaaccaaaatcccaat |
227 |
Q |
| |
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|||| | ||||| ||||| || || || |||||| ||| | |||||||||||||| || ||| ||||| |
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|
| T |
23499853 |
gattgatgatcattgcagagagtgacggagttggacaaaaaagactacaattcacaatcagaattccaat |
23499922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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