View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19931_high_7 (Length: 275)
Name: NF19931_high_7
Description: NF19931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19931_high_7 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 8412470 - 8412724
Alignment:
| Q |
1 |
agcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8412470 |
agcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttatt |
8412569 |
T |
|
| Q |
101 |
gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8412570 |
gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa |
8412669 |
T |
|
| Q |
201 |
ctgtagcattagaaattgtacaatgcttttgttgttgatcttgtaatatttgtgt |
255 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8412670 |
ctgtagcattagaaattgtagaatgcttttgttgttgatcttgtaatatttgtgt |
8412724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 8434568 - 8434822
Alignment:
| Q |
1 |
agcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8434568 |
agcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttatt |
8434667 |
T |
|
| Q |
101 |
gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8434668 |
gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa |
8434767 |
T |
|
| Q |
201 |
ctgtagcattagaaattgtacaatgcttttgttgttgatcttgtaatatttgtgt |
255 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8434768 |
ctgtagcattagaaattgtagaatgcttttgttgttgatcttgtaatatttgtgt |
8434822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 8394979 - 8394725
Alignment:
| Q |
1 |
agcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8394979 |
agcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttatt |
8394880 |
T |
|
| Q |
101 |
gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8394879 |
gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa |
8394780 |
T |
|
| Q |
201 |
ctgtagcattagaaattgtacaatgcttttgttgttgatcttgtaatatttgtgt |
255 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8394779 |
ctgtagcattagaatttgtagaatgcttttgttgttgatcttgtaatatttgtgt |
8394725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 8406350 - 8406560
Alignment:
| Q |
1 |
agcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8406350 |
agcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttatt |
8406449 |
T |
|
| Q |
101 |
gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8406450 |
gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa |
8406549 |
T |
|
| Q |
201 |
ctgtagcatta |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
8406550 |
ctgtagcatta |
8406560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 8395222 - 8395012
Alignment:
| Q |
1 |
agcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8395222 |
agcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaactccagacatggttgtagcagtgagagtaatcatttttatt |
8395123 |
T |
|
| Q |
101 |
gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8395122 |
gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa |
8395023 |
T |
|
| Q |
201 |
ctgtagcatta |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
8395022 |
ctgtagcatta |
8395012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 8431498 - 8431752
Alignment:
| Q |
1 |
agcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttatt |
100 |
Q |
| |
|
|||||| || ||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||||| || ||||||||||||||||||| |||||| |
|
|
| T |
8431498 |
agcagaagatagtttcagagccaaaagtggtgcaacttccccacttgtgacagctgcaacaccagacatagtcttagcagtgagagtaatcatgtttatt |
8431597 |
T |
|
| Q |
101 |
gagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaa |
200 |
Q |
| |
|
||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||| |
|
|
| T |
8431598 |
gagttcaaaagaagattattccagttgttac---gttcgccaatgttgtgatgcatttctattctgtctgatacagcttctaaaactg--tagagttgaa |
8431692 |
T |
|
| Q |
201 |
ctgtagcattagaaattgtacaatgcttttgttgttgatcttgtaatatttgtgttttgt |
260 |
Q |
| |
|
||| || |||||| ||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8431693 |
ttgtggctttagaatttgtagaatgcttttgttgttgatcttgtaatatttctgttttgt |
8431752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 56 - 192
Target Start/End: Original strand, 8417746 - 8417882
Alignment:
| Q |
56 |
gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgca |
155 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| || || || || || |||||| | ||||| ||||||||| |||| | |||||||||||||| |
|
|
| T |
8417746 |
gcaagaccagacatggttgtagcagtgagagtaatcatgttgatggaattcaagagaagagtgttccaattgttacgtagttcacaaatgttgtgatgca |
8417845 |
T |
|
| Q |
156 |
tttctattctgtctgatacagcttccaagactgcata |
192 |
Q |
| |
|
|||| |||||||| || ||| |||||||||||||||| |
|
|
| T |
8417846 |
tttcaattctgtcagaaacaacttccaagactgcata |
8417882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 192
Target Start/End: Complemental strand, 8375475 - 8375339
Alignment:
| Q |
56 |
gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgca |
155 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| || || ||||| || |||||| | ||||| |||||||| |||||||||||||| ||||||| |
|
|
| T |
8375475 |
gcaacaccagacatggttgtagcagtaagagtaatcatgttgatggagttcaagagaagagtgttccaattgttacgctgttcgccaatgttttgatgca |
8375376 |
T |
|
| Q |
156 |
tttctattctgtctgatacagcttccaagactgcata |
192 |
Q |
| |
|
|||| | ||| || || || |||||||||| |||||| |
|
|
| T |
8375375 |
tttcaactctatcagaaactgcttccaagattgcata |
8375339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 192
Target Start/End: Original strand, 8439628 - 8439764
Alignment:
| Q |
56 |
gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgca |
155 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| || || ||||| || |||||| | ||||| ||| |||| |||||||||||||| ||||||| |
|
|
| T |
8439628 |
gcaacaccagacatggttgtagcagtaagagtaatcatgttgatggagttcaagagaagagtgttccaattgctacgctgttcgccaatgttttgatgca |
8439727 |
T |
|
| Q |
156 |
tttctattctgtctgatacagcttccaagactgcata |
192 |
Q |
| |
|
|||| | ||| || || || |||||||||| |||||| |
|
|
| T |
8439728 |
tttcaactctatcagaaactgcttccaagattgcata |
8439764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 80 - 199
Target Start/End: Original strand, 8368812 - 8368931
Alignment:
| Q |
80 |
gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagctt |
179 |
Q |
| |
|
|||||||| ||||| || || |||||||||||||| ||||||| || | ||||||||||||||||| |||||||||||||||||||| ||||||| || |
|
|
| T |
8368812 |
gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt |
8368911 |
T |
|
| Q |
180 |
ccaagactgcatagagttga |
199 |
Q |
| |
|
| | | ||||||||||||| |
|
|
| T |
8368912 |
caagaattgcatagagttga |
8368931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 80 - 199
Target Start/End: Complemental strand, 8400598 - 8400479
Alignment:
| Q |
80 |
gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagctt |
179 |
Q |
| |
|
|||||||| ||||| || || |||||||||||||| ||||||| || | ||||||||||||||||| |||||||||||||||||||| ||||||| || |
|
|
| T |
8400598 |
gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt |
8400499 |
T |
|
| Q |
180 |
ccaagactgcatagagttga |
199 |
Q |
| |
|
| | | ||||||||||||| |
|
|
| T |
8400498 |
caagaattgcatagagttga |
8400479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 80 - 199
Target Start/End: Complemental strand, 8422175 - 8422056
Alignment:
| Q |
80 |
gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagctt |
179 |
Q |
| |
|
|||||||| ||||| || || |||||||||||||| ||||||| || | ||||||||||||||||| |||||||||||||||||||| ||||||| || |
|
|
| T |
8422175 |
gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt |
8422076 |
T |
|
| Q |
180 |
ccaagactgcatagagttga |
199 |
Q |
| |
|
| | | ||||||||||||| |
|
|
| T |
8422075 |
caagaattgcatagagttga |
8422056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 197
Target Start/End: Original strand, 8404470 - 8404604
Alignment:
| Q |
63 |
cagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctat |
162 |
Q |
| |
|
||||||| |||| ||| ||||| || ||||| || || |||||||||| ||| | ||||| |||| |||||||| || | ||| | ||||||||| || |
|
|
| T |
8404470 |
cagacattgttgaagctgtgagtgttatcatgttgatggagtttaataaaagcgtgttccaattgtcacgttgttgtcctaagtttttatgcatttcaat |
8404569 |
T |
|
| Q |
163 |
tctgtctgatacagcttccaagactgcatagagtt |
197 |
Q |
| |
|
||||||||||||||| ||| | | ||||||||||| |
|
|
| T |
8404570 |
tctgtctgatacagcctccgaaattgcatagagtt |
8404604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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