View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19931_low_1 (Length: 657)
Name: NF19931_low_1
Description: NF19931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19931_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 11 - 532
Target Start/End: Original strand, 10017119 - 10017640
Alignment:
| Q |
11 |
agagagatgaaatcacaagaagaacctctcttgctgagagtagagaaaagggtcaacacaaaactaaaaggttagatgataagttatgcttggactttgn |
110 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10017119 |
agagagaagaaatcacaagaagaacctctcttgctgagagtagagaaaagggtcaacacaaaactaaaaggttagatgataagttatgcttggactttga |
10017218 |
T |
|
| Q |
111 |
nnnnnngatggttataagaggagtcaaagaagaaagtattccaggaagcatgttgaacttggatcataaggaaatgctcataggaaggacaagaagttat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10017219 |
aaaaaagatggttataagaggagtcaaagaagaaagtattccaggaagcatgttgaacttggatcataaggaaatgctcataggaaggacaagaagttat |
10017318 |
T |
|
| Q |
211 |
aaatcagaatatggaagtgaaaagagaagatagatctaataataatgatactaaatctttgaaaaattcaaagcaattaagcaaattattttcattactt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10017319 |
aaatcagaatatggaagtgaaaagagaagatagatctaataataatgatactaaatctttgaaaaattcaaagcaattaagcaaattattttcattactt |
10017418 |
T |
|
| Q |
311 |
tgtgtatcactttattcactattcttatcttgtcatctcttaatgcctttgtcataaatgtaatcagggtgtgatccaatgtaatttctatcacatttaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10017419 |
tgtgtatcactttattcactattcttatcttgtcatctcttaatgcctttgtcataaatgtaatcagggtgtgatccaatgtaatttctatcacatttaa |
10017518 |
T |
|
| Q |
411 |
aggctgtacttatatttatcaaaaatgtcaatgcacttgaattaaaatagtgaattatcaaactggttattgactttgtagagtgctatcaacttagttc |
510 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10017519 |
aggctgtatttgtatttatcaaaaatgtcaatgcacttgaattaaaatagtgaattatcaaactggttattgactttgtagggtgctatcaacttagttc |
10017618 |
T |
|
| Q |
511 |
tttggactaataaaagttaaaa |
532 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
10017619 |
tctggactaataaaagttaaaa |
10017640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 508 - 641
Target Start/End: Original strand, 10017682 - 10017815
Alignment:
| Q |
508 |
ttctttggactaataaaagttaaaatagtccttctctgtcagaacattaaataacagtaaaacgctaaataatcaactttagatttttgcttatgaatgg |
607 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10017682 |
ttctttggactaataaaagttaaaaaagtccttctctgtcagaacattaaataacagtaaaacgctaaataatcaactttagatttttgcttatgaatgg |
10017781 |
T |
|
| Q |
608 |
aacgaccagaatttaactacactaggctgcatct |
641 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
10017782 |
aacgaccagaatttaactacactaggctgcatct |
10017815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University