View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19931_low_2 (Length: 396)

Name: NF19931_low_2
Description: NF19931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19931_low_2
NF19931_low_2
[»] chr7 (2 HSPs)
chr7 (15-383)||(46708933-46709301)
chr7 (15-317)||(46707968-46708270)
[»] chr1 (2 HSPs)
chr1 (58-376)||(36926297-36926615)
chr1 (237-328)||(47126843-47126934)
[»] chr8 (13 HSPs)
chr8 (207-316)||(6262182-6262291)
chr8 (267-316)||(6273451-6273500)
chr8 (267-316)||(6389882-6389931)
chr8 (268-316)||(6368901-6368949)
chr8 (270-318)||(6423160-6423208)
chr8 (267-318)||(6351240-6351291)
chr8 (265-316)||(6456154-6456205)
chr8 (269-316)||(7457983-7458030)
chr8 (269-316)||(7470385-7470432)
chr8 (265-319)||(6449687-6449741)
chr8 (267-316)||(6362125-6362174)
chr8 (56-112)||(6261939-6261995)
chr8 (265-313)||(6409129-6409177)
[»] chr5 (1 HSPs)
chr5 (255-316)||(9606278-9606339)
[»] chr2 (2 HSPs)
chr2 (273-316)||(42692174-42692217)
chr2 (60-112)||(42689835-42689887)


Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 15 - 383
Target Start/End: Original strand, 46708933 - 46709301
Alignment:
Q  15 tcaaatgcttccagtggttctgcatcacatgtccaatgcatactgtctctttgtccaaggtagacctcatcagaagaatgtgtagacaaaatttctataa 114  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46708933 tcaaatgcttccagtggctctgcatcacatgtccaatgcatactgtctctttgtccaaggtagacctcatcagaagaatgtgtagacaaaatttctataa 46709032  T
Q  115 gcgaaattccaacaagagtctgcaattgtcccgtgattgttttcaaaaaagctttatcaggatttgtcacaagttcatcataatctatagttcctttctc 214  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  46709033 gcgaaatgccaacaagagtctgcaattgtgccgtgattgttttcaaaaaagctttatcaggatttgtcacaagttcatcatactctatagttcctttctc 46709132  T
Q  215 aggcatgaatcggcgacttattgttggacggtttggtgagtaacctgcaaaaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46709133 aggcatgaatcggcgacttattgttggacggtttggtgagtaacctgcaaaaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccat 46709232  T
Q  315 ataatgattgtgcatgtttccgtcaactcttccactgtttgcatctttggccaccaaggctcgtttttc 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46709233 ataatgattgtgcatgtttccgtcaactcttccactgtttgcatctttggccaccaaggctcgtttttc 46709301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 15 - 317
Target Start/End: Original strand, 46707968 - 46708270
Alignment:
Q  15 tcaaatgcttccagtggttctgcatcacatgtccaatgcatactgtctctttgtccaaggtagacctcatcagaagaatgtgtagacaaaatttctataa 114  Q
    ||||||||||||| ||| ||||||||| || |||||||  || ||||||||| ||||||||||||||||||||||||||||| |||||  ||||||||||    
T  46707968 tcaaatgcttccaatggctctgcatcatatatccaatgtttagtgtctctttctccaaggtagacctcatcagaagaatgtgcagacagtatttctataa 46708067  T
Q  115 gcgaaattccaacaagagtctgcaattgtcccgtgattgttttca-aaaaagctttatcaggatttgtcacaagttcatcataatctatagttcctttct 213  Q
    ||||||  ||||||||| ||||||||||  |||  | |||||||| ||||||| || |||||||||| ||||||||||| ||| ||||||||||||||||    
T  46708068 gcgaaacgccaacaagaatctgcaattgcgccgcaactgttttcagaaaaagccttctcaggatttgccacaagttcataatactctatagttcctttct 46708167  T
Q  214 caggcatgaatcggcgacttattgttggacggtttggtgagtaacctgcaaaaggatattgtccaaagtttacagctgcatgtagagctgaagcaatcca 313  Q
    |||||||||| | ||||||| ||||| |||  || || ||||||| |||| |||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  46708168 caggcatgaaactgcgactttttgttagac-attaggcgagtaacttgcataaggatattgtccaaattttacagctgcatgtagggctgaagcaatcca 46708266  T
Q  314 tata 317  Q
    ||||    
T  46708267 tata 46708270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 58 - 376
Target Start/End: Complemental strand, 36926615 - 36926297
Alignment:
Q  58 tgtctctttgtccaaggtagacctcatcagaagaatgtgtagacaaaatttctataagcgaaattccaacaagagtctgcaattgtcccgtgattgtttt 157  Q
    ||||||| |||||||||||||||||||||  || |||  ||||||| ||||| | ||| ||||  |||| || ||  || || |||   |||||||||||    
T  36926615 tgtctctctgtccaaggtagacctcatcactagcatgcctagacaatatttccacaagtgaaagaccaagaacagcttgaaactgtgaagtgattgtttt 36926516  T
Q  158 caaaaaagctttatcaggatttgtcacaagttcatcataatctatagttcctttctcaggcatgaatcggcgacttattgttggacggtttggtgagtaa 257  Q
    || ||||||||| |||||||||  || ||||||||  || |||  ||||||||| |||||||||| ||| || || || |  |||||  | ||||  ||     
T  36926515 cagaaaagctttgtcaggattttccaaaagttcattgtactcttgagttcctttttcaggcatgagtcgtcggctcatagaaggacgactcggtggatag 36926416  T
Q  258 cctgcaaaaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatataatgattgtgcatgtttccgtcaactcttccactgtttgca 357  Q
    ||| || | ||||| ||||||||||| || || ||||| ||||||||||||||||||||||| || ||||| |||||  ||| |||||| |  || ||||    
T  36926415 cctccatatggatactgtccaaagttgactgcagcatggagagctgaagcaatccatataataatagtgcaagtttcaatcagctcttcgagagtatgca 36926316  T
Q  358 tctttggccaccaaggctc 376  Q
    |||||||||||||||||||    
T  36926315 tctttggccaccaaggctc 36926297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 328
Target Start/End: Original strand, 47126843 - 47126934
Alignment:
Q  237 gttggacggtttggtgagtaacctgcaaaaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatataatgattgtgca 328  Q
    |||||||| ||||||  |||||||||| |||| |||||||||||||| ||||||||||| | ||| ||||| | ||||||||| || |||||    
T  47126843 gttggacgatttggtaggtaacctgcataagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatataataatggtgca 47126934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 316
Target Start/End: Original strand, 6262182 - 6262291
Alignment:
Q  207 cctttctcaggcatgaatcggcgacttattgttggacggtttggtgagtaacctgcaaaaggatattgtccaaagtttacagctgcatgtagagctgaag 306  Q
    |||||||||||||| ||||| | ||| |  ||||||||||||  |  | ||||| || | |||||||||||||| || ||||||||||| ||||||||||    
T  6262182 cctttctcaggcattaatcgcctactaagagttggacggtttaatatgaaacctccatacggatattgtccaaaattaacagctgcatgaagagctgaag 6262281  T
Q  307 caatccatat 316  Q
    || |||||||    
T  6262282 cagtccatat 6262291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 6273451 - 6273500
Alignment:
Q  267 ggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatat 316  Q
    |||||||||||||| || ||||||||||| || |||||||||||||||||    
T  6273451 ggatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatat 6273500  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 6389882 - 6389931
Alignment:
Q  267 ggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatat 316  Q
    |||||||||||||| || ||||||||||| || |||||||||||||||||    
T  6389882 ggatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatat 6389931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 316
Target Start/End: Original strand, 6368901 - 6368949
Alignment:
Q  268 gatattgtccaaagtttacagctgcatgtagagctgaagcaatccatat 316  Q
    ||||||||||||| || ||||||||||| || |||||||||||||||||    
T  6368901 gatattgtccaaaattaacagctgcatgaagtgctgaagcaatccatat 6368949  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 6423160 - 6423208
Alignment:
Q  270 tattgtccaaagtttacagctgcatgtagagctgaagcaatccatataa 318  Q
    ||||||||||| || ||||||||||| || |||||||||||||||||||    
T  6423160 tattgtccaaaattaacagctgcatgaagtgctgaagcaatccatataa 6423208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 6351240 - 6351291
Alignment:
Q  267 ggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatataa 318  Q
    ||||||||||| || || ||||||||||| || |||||||||||||||||||    
T  6351240 ggatattgtccgaaattaacagctgcatgaagtgctgaagcaatccatataa 6351291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 6456154 - 6456205
Alignment:
Q  265 aaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatat 316  Q
    ||||||| ||||||||||| || |||||||| |||||||||||| |||||||    
T  6456154 aaggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatat 6456205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 316
Target Start/End: Original strand, 7457983 - 7458030
Alignment:
Q  269 atattgtccaaagtttacagctgcatgtagagctgaagcaatccatat 316  Q
    |||||||||||| || ||||||||||| || |||||||||||||||||    
T  7457983 atattgtccaaaattaacagctgcatgaagtgctgaagcaatccatat 7458030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 316
Target Start/End: Original strand, 7470385 - 7470432
Alignment:
Q  269 atattgtccaaagtttacagctgcatgtagagctgaagcaatccatat 316  Q
    |||||||||||| || ||||||||||| || |||||||||||||||||    
T  7470385 atattgtccaaaattaacagctgcatgaagtgctgaagcaatccatat 7470432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 319
Target Start/End: Original strand, 6449687 - 6449741
Alignment:
Q  265 aaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatataat 319  Q
    ||||||||||||| || || ||||||||||| ||||| |||||| ||||||||||    
T  6449687 aaggatattgtccgaaattaacagctgcatgaagagcagaagcagtccatataat 6449741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 6362125 - 6362174
Alignment:
Q  267 ggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatat 316  Q
    |||||||||||||| || || |||||||| || |||||||||||||||||    
T  6362125 ggatattgtccaaaattaactgctgcatgaagtgctgaagcaatccatat 6362174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 6261939 - 6261995
Alignment:
Q  56 actgtctctttgtccaaggtagacctcatcagaagaatgtgtagacaaaatttctat 112  Q
    ||||||||||||||||||||||  ||||||||||| |||  | ||||| ||||||||    
T  6261939 actgtctctttgtccaaggtagtactcatcagaagcatgcctcgacaatatttctat 6261995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 6409129 - 6409177
Alignment:
Q  265 aaggatattgtccaaagtttacagctgcatgtagagctgaagcaatcca 313  Q
    |||||||||||||||| || ||||||||||| || |||||||| |||||    
T  6409129 aaggatattgtccaaaattaacagctgcatgaagtgctgaagccatcca 6409177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 316
Target Start/End: Complemental strand, 9606339 - 9606278
Alignment:
Q  255 taacctgcaaaaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatat 316  Q
    |||||| || |||||||||||||||| || ||||||||||| ||||| |||||| |||||||    
T  9606339 taacctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatat 9606278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 273 - 316
Target Start/End: Original strand, 42692174 - 42692217
Alignment:
Q  273 tgtccaaagtttacagctgcatgtagagctgaagcaatccatat 316  Q
    |||||||| || ||||||||||| ||||||||||||||||||||    
T  42692174 tgtccaaaattaacagctgcatgaagagctgaagcaatccatat 42692217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 42689887 - 42689835
Alignment:
Q  60 tctctttgtccaaggtagacctcatcagaagaatgtgtagacaaaatttctat 112  Q
    ||||||||||||||||| || |||||||||| |||| | ||||| ||||||||    
T  42689887 tctctttgtccaaggtaaacttcatcagaagcatgtcttgacaatatttctat 42689835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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