View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19931_low_3 (Length: 353)

Name: NF19931_low_3
Description: NF19931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19931_low_3
NF19931_low_3
[»] chr1 (3 HSPs)
chr1 (22-336)||(15237022-15237336)
chr1 (57-329)||(34051858-34052130)
chr1 (76-128)||(31197688-31197740)
[»] chr3 (1 HSPs)
chr3 (97-194)||(48670642-48670739)
[»] chr7 (1 HSPs)
chr7 (76-215)||(49041796-49041935)
[»] chr6 (2 HSPs)
chr6 (91-236)||(10277326-10277471)
chr6 (76-215)||(26463858-26463997)
[»] chr4 (2 HSPs)
chr4 (76-215)||(26452754-26452893)
chr4 (261-309)||(19678084-19678132)
[»] chr2 (1 HSPs)
chr2 (58-227)||(23499753-23499922)


Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 22 - 336
Target Start/End: Complemental strand, 15237336 - 15237022
Alignment:
Q  22 ttttggataatggaaattagagagatataatatactacctgtaggagctgtttggcaaggtcaatagagataagaccagcactacaacccataccaccaa 121  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15237336 ttttggattatggaaattagagagatataatatactacctgtaggagctgtttggcaaggtcaatagagataagaccagcactacaacccataccaccaa 15237237  T
Q  122 gattataactcaagatatttcctctcaacttataatgattcacaatcatggcagaaagagatggtgttggattaaacaaactacaattcacaaccaaaat 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15237236 gattataactcaagatatttcctctcaacttataatgattcacaatcatggcagaaagagatggtgttggattaaacaaactacaattcacaaccaaaat 15237137  T
Q  222 cccaatatccttagccttcacaccagttttttgaagaacctcatcaatagcaccaaacataacctcttcagcttctttccttgcttcagccatacatgga 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15237136 cccaatatccttagccttcacaccagttttttgaagaacctcatcaatagcaccaaacataacctcttcagcttctttccttgcttcagccatacatgga 15237037  T
Q  322 ttaggtgggaccctc 336  Q
    |||||||||||||||    
T  15237036 ttaggtgggaccctc 15237022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 57 - 329
Target Start/End: Complemental strand, 34052130 - 34051858
Alignment:
Q  57 tacctgtaggagctgtttggcaaggtcaatagagataagaccagcactacaacccataccaccaagattataactcaagatatttcctctcaacttataa 156  Q
    ||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    | ||| ||||| |||||||||    
T  34052130 tacctgtaggagctgcttagcaaggtcaatagagataagtccagcactacaacccataccaccaagattataactttgaacattccctcttaacttataa 34052031  T
Q  157 tgattcacaatcatggcagaaagagatggtgttggattaaacaaactacaattcacaaccaaaatcccaatatccttagccttcacaccagttttttgaa 256  Q
    |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |  |    
T  34052030 tgattcacaatcatagcagaaagagaaggtgtaggattaaacaaactacaattcacaaccaaaatcccaatatccttagccttaacaccagttttctcca 34051931  T
Q  257 gaacctcatcaatagcaccaaacataacctcttcagcttctttccttgcttcagccatacatggattaggtgg 329  Q
     || |||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| |||||    
T  34051930 aaagctcatcaatagcaccaaacataacttcctcagcttctttccttgcttcagccatacaaggatttggtgg 34051858  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 31197740 - 31197688
Alignment:
Q  76 gcaaggtcaatagagataagaccagcactacaacccataccaccaagattata 128  Q
    ||||| ||||| || |||||||||||||||||||||||||| |||||||||||    
T  31197740 gcaagatcaattgaaataagaccagcactacaacccatacctccaagattata 31197688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 97 - 194
Target Start/End: Complemental strand, 48670739 - 48670642
Alignment:
Q  97 ccagcactacaacccataccaccaagattataactcaagatatttcctctcaacttataatgattcacaatcatggcagaaagagatggtgttggatt 194  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||| | ||||||||| || |  ||||||||||||||    
T  48670739 ccagcactacaacccataccaccaagattataactcaaaatatttcccctcatcttataatgatttataatcatggctgacaatgatggtgttggatt 48670642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 215
Target Start/End: Original strand, 49041796 - 49041935
Alignment:
Q  76 gcaaggtcaatagagataagaccagcactacaacccataccaccaagattataactcaagatatttcctctcaacttataatgattcacaatcatggcag 175  Q
    ||||| ||||| || |||||||||||||||||||||||||| || |||||||| ||    || |||  ||| | ||| ||||| ||||||||||| ||||    
T  49041796 gcaagatcaattgaaataagaccagcactacaacccatacctccgagattatagcttttaatgtttgttctaagcttgtaatggttcacaatcattgcag 49041895  T
Q  176 aaagagatggtgttggattaaacaaactacaattcacaac 215  Q
    |||| || || ||||| ||||||||||||||||| |||||    
T  49041896 aaagtgaaggagttgggttaaacaaactacaatttacaac 49041935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 236
Target Start/End: Complemental strand, 10277471 - 10277326
Alignment:
Q  91 ataagaccagcactacaacccataccaccaagattataactcaagatatttcctctcaacttataatgattcacaatcatggcagaaagagatggtgttg 190  Q
    |||| ||||||||| || |||||||||| |||||||||  |||| ||||||||||| |  ||||||||||| |||||  |  | ||||| |||||||| |    
T  10277471 ataacaccagcactgcatcccataccactaagattatagatcaaaatatttcctctaagtttataatgattaacaatagtatctgaaagtgatggtgtag 10277372  T
Q  191 gattaaacaaactacaattcacaaccaaaatcccaatatccttagc 236  Q
    ||||||| |||| ||||||||| || | ||| |||||||| |||||    
T  10277371 gattaaataaacaacaattcaccacaagaattccaatatctttagc 10277326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 215
Target Start/End: Complemental strand, 26463997 - 26463858
Alignment:
Q  76 gcaaggtcaatagagataagaccagcactacaacccataccaccaagattataactcaagatatttcctctcaacttataatgattcacaatcatggcag 175  Q
    ||||| ||||| || |||||||||||||||||||||||||| ||||||||||| ||    || |||  ||| | ||| | ||| ||||||||||| ||||    
T  26463997 gcaagatcaattgaaataagaccagcactacaacccatacctccaagattatagcttttaatgtttgttcttagcttgtcatggttcacaatcattgcag 26463898  T
Q  176 aaagagatggtgttggattaaacaaactacaattcacaac 215  Q
    |||| || || ||||| ||| ||||||||||||| |||||    
T  26463897 aaagggaaggagttgggttatacaaactacaatttacaac 26463858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 215
Target Start/End: Complemental strand, 26452893 - 26452754
Alignment:
Q  76 gcaaggtcaatagagataagaccagcactacaacccataccaccaagattataactcaagatatttcctctcaacttataatgattcacaatcatggcag 175  Q
    ||||| |||||||  |||| |||||||||||||||||||||||| | |||| ||||    ||||| || || || ||||| |  || |||||||| || |    
T  26452893 gcaagatcaatagctataacaccagcactacaacccataccacccaaattaaaacttctaatattaccccttaatttatatttgttaacaatcatagctg 26452794  T
Q  176 aaagagatggtgttggattaaacaaactacaattcacaac 215  Q
    |||| ||||| ||||||||||||||||||||||| |||||    
T  26452793 aaagtgatggcgttggattaaacaaactacaattaacaac 26452754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 309
Target Start/End: Original strand, 19678084 - 19678132
Alignment:
Q  261 ctcatcaatagcaccaaacataacctcttcagcttctttccttgcttca 309  Q
    |||||||||||||||||| ||||||  ||| | ||||||||||||||||    
T  19678084 ctcatcaatagcaccaaaaataaccgattctgtttctttccttgcttca 19678132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 227
Target Start/End: Original strand, 23499753 - 23499922
Alignment:
Q  58 acctgtaggagctgtttggcaaggtcaatagagataagaccagcactacaacccataccaccaagattataactcaagatatttcctctcaacttataat 157  Q
    ||||| || |||| ||| ||||| ||||| || ||||  |||||||| || ||||| ||||||||||| |||||||  || || ||||||| |||||| |    
T  23499753 acctggagaagctctttagcaagatcaattgaaataatcccagcactgcatcccatcccaccaagattgtaactcattatgttacctctcagcttatagt 23499852  T
Q  158 gattcacaatcatggcagaaagagatggtgttggattaaacaaactacaattcacaaccaaaatcccaat 227  Q
    |||| |  ||||| ||||| || || || ||||||  ||| | |||||||||||||| || ||| |||||    
T  23499853 gattgatgatcattgcagagagtgacggagttggacaaaaaagactacaattcacaatcagaattccaat 23499922  T

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