View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19931_low_6 (Length: 317)
Name: NF19931_low_6
Description: NF19931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19931_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 46958239 - 46958532
Alignment:
| Q |
8 |
agattattctgaagcaattcgtccacagtcatttctgcactaaccacatcaactgtgtttccaaagtactcctgcggcaaaggtggttccaatcttagtc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46958239 |
agattattctgaagcaattcgtccacagtcatttctgcactaaccacatcaactgtgtttccaaagtactcctgcggcaaaggtggttccaatcttagtc |
46958338 |
T |
|
| Q |
108 |
gattatttatagctaacttacaacttgttttttgatcatttgttagtccgcgtgcacgtgtgacacatctccaaacatgtgctgataaagcctggaacga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46958339 |
gattatttatagctaacttacaacttgttttttgatcatttgttagtccgcgtgcacgtgtgacacatctccaaacatgtgctgataaagcctggaacga |
46958438 |
T |
|
| Q |
208 |
agatatttttgttgtgttaaactccttattcgcctttgctttcagttttacaatagactccggtgtaaaatggaagaatctatctctgaagttg |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46958439 |
agatatttttgttgtgttaaactccttattcgcctttgctttcagttttacaatagactccggtgtaaaatggaagaatctatctctgaagttg |
46958532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 13 - 267
Target Start/End: Original strand, 46955391 - 46955645
Alignment:
| Q |
13 |
attctgaagcaattcgtccacagtcatttctgcactaaccacatcaactgtgtttccaaagtactcctgcggcaaaggtggttccaatcttagtcgatta |
112 |
Q |
| |
|
||||| |||||||||| | |||||| |||||| ||| ||||||||||||| ||||||||||||||| ||||| | |||||||| | |||| || ||| |
|
|
| T |
46955391 |
attctcaagcaattcgcctacagtcgtttctgtactcaccacatcaactgagtttccaaagtactcttgcgggagaggtggtttgattcttgatctattg |
46955490 |
T |
|
| Q |
113 |
tttatagctaacttacaacttgttttttgatcatttgttagtccgcgtgcacgtgtgacacatctccaaacatgtgctgataaagcctggaacgaagata |
212 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||||| | |||||| ||||||| || |||| |||||||||| ||| ||||||| ||||| ||||||| |
|
|
| T |
46955491 |
tttatggctaacttgcaactggttttttgatcatgttttagtcttcgtgcacaagtcacacttctccaaacaaatgccgataaagattggaaggaagata |
46955590 |
T |
|
| Q |
213 |
tttttgttgtgttaaactccttattcgcctttgctttcagttttacaatagactc |
267 |
Q |
| |
|
||| |||| || | || ||||| |||||||||||||||||| |||||||||| |
|
|
| T |
46955591 |
tttcatttgtattggattctttattggcctttgctttcagttttgcaatagactc |
46955645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 88 - 294
Target Start/End: Original strand, 46951138 - 46951344
Alignment:
| Q |
88 |
aggtggttccaatcttagtcgattatttatagctaacttacaacttgttttttgatcatttgttagtccgcgtgcacgtgtgacacatctccaaacatgt |
187 |
Q |
| |
|
|||||||| || ||| |||||||||||| |||||| ||||| ||||| ||||||||| ||||| |||| ||||| || | || ||||||||||||| |
|
|
| T |
46951138 |
aggtggtttcattctcggtcgattatttacggctaacatacaagttgttacttgatcattcgttaggtcgcgagcacgagttatacctctccaaacatgt |
46951237 |
T |
|
| Q |
188 |
gctgataaagcctggaacgaagatatttttgttgtgttaaactccttattcgcctttgctttcagttttacaatagactccggtgtaaaatggaagaatc |
287 |
Q |
| |
|
|||||||||| ||||| ||||| ||||| |||| ||| ||||| |||| ||||| ||||||| ||| |||||||||| | ||||||||||||||||| |
|
|
| T |
46951238 |
gctgataaagattggaatgaagagattttgtttgtattagactccatattggccttagctttcaactttgcaatagactctgctgtaaaatggaagaatc |
46951337 |
T |
|
| Q |
288 |
tatctct |
294 |
Q |
| |
|
| ||||| |
|
|
| T |
46951338 |
tctctct |
46951344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 294
Target Start/End: Original strand, 46974663 - 46974783
Alignment:
| Q |
174 |
atctccaaacatgtgctgataaagcctggaacgaagatatttttgttgtgttaaactccttattcgcctttgctttcagttttacaatagactccggtgt |
273 |
Q |
| |
|
|||||||||| ||||||||||| || |||||||| |||||| |||| ||| |||| | ||| ||||||||||||||||| | |||||||| | || |
|
|
| T |
46974663 |
atctccaaactaatgctgataaagattgaaacgaagaaatttttcttgtattagactcttcatttgcctttgctttcagtttcattatagactcagctga |
46974762 |
T |
|
| Q |
274 |
aaaatggaagaatctatctct |
294 |
Q |
| |
|
||||||||||| ||| ||||| |
|
|
| T |
46974763 |
aaaatggaagattctctctct |
46974783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 301
Target Start/End: Original strand, 46963713 - 46963752
Alignment:
| Q |
262 |
agactccggtgtaaaatggaagaatctatctctgaagttg |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
46963713 |
agactccggtgtaaaatggaagaatctatctctcaagttg |
46963752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University