View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19932_high_11 (Length: 469)
Name: NF19932_high_11
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19932_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 9 - 452
Target Start/End: Original strand, 30466024 - 30466461
Alignment:
| Q |
9 |
tcgaagaatattgattcatgtaattatttgttttgtctttgaagtttactcatttgttgaatcaattattatttctttatttcttgctagtaattaatga |
108 |
Q |
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| T |
30466024 |
tcgaaaaatattgattcatgtaattatttgttttgtctttgaagtttactcatttgttgaatcaattattatttctttatttcttgccagtaattaatga |
30466123 |
T |
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| Q |
109 |
ctaattgttttggcatcttatagatttttaaagaaatatcaaatattagtgatgatgagcatattggtgtgaagagaattagggacctcaataccaaacc |
208 |
Q |
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| T |
30466124 |
ctaattgttttggcatcttatagatttttaaagaaatatcaaatattagtgatgatgagcatattggtgtgaagagaattagggacctcaataccaaacc |
30466223 |
T |
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| Q |
209 |
attcatcaatgctatgaagaaaagatacaatgcagatgaagctgaaattagagcttcaagactgtgttctttatgggtcgaaaatataaaggacacaaat |
308 |
Q |
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| T |
30466224 |
attcatcaatgctatgaagaaaagatacaatgcagatgaagctgaaattagagcttcaagactgtgttctttatgggtcgaaaatataaaggacacaaat |
30466323 |
T |
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| Q |
309 |
tggaatccagtcaaaattgttttcgttgatggggtagctaaggtatagttctaactcctgttacttttaatcgaatttggttcatcatcatctgttgctt |
408 |
Q |
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| T |
30466324 |
tggaatccagtcaaaattgttttcgttgatggggtagctaaggtatagttctaactcctgttacttttaatcgaatttggt------tcatctgttgctt |
30466417 |
T |
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| Q |
409 |
gttttattacataggacaggaaatatttgattgatggacccttt |
452 |
Q |
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| T |
30466418 |
gttttattacataggacaggaaatatttgatcgatggacccttt |
30466461 |
T |
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