View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19932_high_15 (Length: 439)
Name: NF19932_high_15
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19932_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 43437460 - 43437884
Alignment:
| Q |
1 |
tggaagaatcttgacgtgcttccccccactaactacgggtgatggcgttgagagcctctcatgggaggctgcaggacactctccagacacctgaaatgga |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43437460 |
tggaagaatcttgacgtgcttccccccaccaactacgggtgatggcgttgagagcctctcatgggaggctgcaggacactctccagacacctgaaatgga |
43437559 |
T |
|
| Q |
101 |
aaacaggccaaatttcattcagaggccagaagttgaaggagaaagactgtcatttaggcaactaattgaatgacctcttgtccatttgtcggtcgtagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43437560 |
aaacaggccaaatttcattcagaggccagaagttgaaggagaaagactgtcatttaggcaactaattgaatgacctcttgtccatttgtcggtcgtagaa |
43437659 |
T |
|
| Q |
201 |
tgtgattgtgagaaatttccttatcataatcaaagtcaagagcaacttcatcaccatctccatcaactgcaggacttcctggaatcaataagtagtttaa |
300 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43437660 |
tgtgattgtgagaaacttccttatcataatcaaagtcaagagcaacttcatcaccatctccatcaactgcaggacttcctggaatcaataagtagtttaa |
43437759 |
T |
|
| Q |
301 |
ttaacaaccgaaatatcacgcaagtataaatgacatcttctacaaaccatcaagcaactagtaacaatagtgctagtgtgataaaggatatattcaatca |
400 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43437760 |
ttaacagccgaaatatcacgcaagtataaatgacatcttctacaaaccatcaagcaactagtaacaatagtgctagtgtgataaaggatatattcaatca |
43437859 |
T |
|
| Q |
401 |
tcgggttcatagaaaatagcctttg |
425 |
Q |
| |
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|||| |||||||||||||||||||| |
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| T |
43437860 |
tcggattcatagaaaatagcctttg |
43437884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 13827864 - 13828076
Alignment:
| Q |
18 |
gcttccccccactaactacgggtgatggcgttgagagcctctcatgggaggctgcaggacactctccagacacctgaaatggaaaacaggccaaatttca |
117 |
Q |
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|||||||||||| | |||||||||||| | |||||||||||||| ||||| |||||| | | |||||||||||||||||| ||||||| ||||||||||| |
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| T |
13827864 |
gcttccccccaccagctacgggtgatgacattgagagcctctcaggggagcctgcagaaaattctccagacacctgaaattgaaaacatgccaaatttca |
13827963 |
T |
|
| Q |
118 |
ttcagaggccagaagttgaaggagaaagactgtcatttaggcaactaattgaatgacctcttgtccatttgtcggtcgtagaatgtgattgtgagaaatt |
217 |
Q |
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|||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||| |||||||||||||||||| | |
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| T |
13827964 |
ttcagaggcccgtagttgaaggagaaagactgtcatttaggaaactaattgaatgacctcttgtccacttgtcagtctaggaatgtgattgtgagaaact |
13828063 |
T |
|
| Q |
218 |
tccttatcataat |
230 |
Q |
| |
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|||||||| |||| |
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|
| T |
13828064 |
tccttatcgtaat |
13828076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 9476257 - 9476225
Alignment:
| Q |
198 |
gaatgtgattgtgagaaatttccttatcataat |
230 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
9476257 |
gaatgtgattgtgagaaacttccttatcataat |
9476225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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