View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19932_high_19 (Length: 414)

Name: NF19932_high_19
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19932_high_19
NF19932_high_19
[»] chr4 (1 HSPs)
chr4 (19-403)||(52633521-52633904)
[»] chr7 (1 HSPs)
chr7 (226-288)||(18668874-18668936)
[»] chr2 (1 HSPs)
chr2 (224-293)||(14509318-14509387)
[»] chr5 (4 HSPs)
chr5 (226-294)||(19825985-19826053)
chr5 (224-293)||(38471398-38471467)
chr5 (224-288)||(12830881-12830945)
chr5 (224-288)||(12862861-12862925)
[»] chr1 (1 HSPs)
chr1 (226-288)||(29001065-29001127)


Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 403
Target Start/End: Complemental strand, 52633904 - 52633521
Alignment:
Q  19 gggacaactaagacatatggtgtacattgttatgagggtttaatggaaaattctgcatgataaacatatggtgtagggttattaatgacttaattgttca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  52633904 gggacaactaagacatatggtgtacattgttatgagggtttaatggaaaattctgcatgataaacatatggtgtatggttattaatgacttaattgttca 52633805  T
Q  119 ttcaggnnnnnnnnaacttaattatttgttttaaattggtctcataattnnnnnnnncgtcttaatgtggtcccttatgttttatgtcattacatttttg 218  Q
    ||||||        || ||||||||||||||||||||||||||||||||        ||||||||| |||||| ||||||||||||||||||||||||||    
T  52633804 ttcaggttttttttaatttaattatttgttttaaattggtctcataattaaaaaaa-cgtcttaatatggtcctttatgttttatgtcattacatttttg 52633706  T
Q  219 aatcatctccgttaatttttaaccttaattatctaaggtagaccaatattaaaggtgatctaccatagactttataaannnnnnnattttaacaatttga 318  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||| |||||||       |||||||||||||||    
T  52633705 aatcatctccgtcaatttttaaccttaattatctaaggtagatcaatattgaaggtggtctaccatagaccttataaatttttttattttaacaatttga 52633606  T
Q  319 tcttctttaaatggatgatctcgttgaatcatgcaactctattatatcctaccgtcaaccaccaacatctaaattttttcccttt 403  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  52633605 tcttttttaaatggatgatctcgttgaatcatgcaactctattatatcctacagtcaaccaccaacatctaatttttttcccttt 52633521  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 288
Target Start/End: Original strand, 18668874 - 18668936
Alignment:
Q  226 tccgttaatttttaaccttaattatctaaggtagaccaatattaaaggtgatctaccatagac 288  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||| | ||| || |||||||||    
T  18668874 tccgttaatttttaaccataaatatctaaagtagaccaatattatatgtggtccaccatagac 18668936  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 293
Target Start/End: Original strand, 14509318 - 14509387
Alignment:
Q  224 tctccgttaatttttaaccttaattatctaaggtagaccaatattaaaggtgatctaccatagactttat 293  Q
    ||||||||||||||||||||||| | ||||||||| |||||  ||| ||||| || ||||||||| ||||    
T  14509318 tctccgttaatttttaaccttaaatgtctaaggtaaaccaactttataggtggtccaccatagaccttat 14509387  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 19825985 - 19826053
Alignment:
Q  226 tccgttaatttttaaccttaattatctaaggtagaccaatattaaaggtgatctaccatagactttata 294  Q
    ||||||| ||||||||| ||| ||| ||||||||||||| |||| | |||||| ||||||||| |||||    
T  19825985 tccgttagtttttaaccataaatatataaggtagaccaacattatatgtgatccaccatagaccttata 19826053  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 293
Target Start/End: Original strand, 38471398 - 38471467
Alignment:
Q  224 tctccgttaatttttaaccttaattatctaaggtagaccaatattaaaggtgatctaccatagactttat 293  Q
    |||| |||||||||||||||||| | | ||||||  |||||  ||| ||||| |||||||||||||||||    
T  38471398 tctctgttaatttttaaccttaaatgtttaaggtgaaccaactttataggtggtctaccatagactttat 38471467  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 12830945 - 12830881
Alignment:
Q  224 tctccgttaatttttaaccttaattatctaaggtagaccaatattaaaggtgatctaccatagac 288  Q
    ||||||||||||||||||| ||| ||||| ||||  ||||| |||| ||||| || |||||||||    
T  12830945 tctccgttaatttttaaccctaaatatcttaggtgaaccaacattataggtggtccaccatagac 12830881  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 12862925 - 12862861
Alignment:
Q  224 tctccgttaatttttaaccttaattatctaaggtagaccaatattaaaggtgatctaccatagac 288  Q
    ||||||||||||||||||| ||| ||||| ||||  ||||| |||| ||||| || |||||||||    
T  12862925 tctccgttaatttttaaccctaaatatcttaggtgaaccaacattataggtggtccaccatagac 12862861  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 288
Target Start/End: Complemental strand, 29001127 - 29001065
Alignment:
Q  226 tccgttaatttttaaccttaattatctaaggtagaccaatattaaaggtgatctaccatagac 288  Q
    ||||||||||||||||| ||| ||||||| || ||||||||||| | ||| || |||||||||    
T  29001127 tccgttaatttttaaccataaatatctaaagtggaccaatattatatgtggtccaccatagac 29001065  T

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