View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19932_high_2 (Length: 658)

Name: NF19932_high_2
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19932_high_2
NF19932_high_2
[»] chr4 (1 HSPs)
chr4 (19-648)||(35744987-35745628)


Alignment Details
Target: chr4 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 19 - 648
Target Start/End: Original strand, 35744987 - 35745628
Alignment:
Q  19 cacatttagattttcaggatgctaagatttcagtaattatcataattagaataatttcatttcaggtgcagcttatttaatgttgaaactataattacct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35744987 cacatttagattttcaggatgctaagatttcagtaattatcataattagaataatttcatttcaggtgcagcttatttaatgttgaaactataattacct 35745086  T
Q  119 gatcaatagacttgtcctcaatctttgacagttgagtttttgttatgatctctggatatagcctttgtagatcattcagtgttctcataactatctgcaa 218  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35745087 gatcaatagacttgtcctcaatctttgacacttgagtttttgttatgatctctggatatagcctttgtagatcattcagtgttctcataactatctgcaa 35745186  T
Q  219 tgtgacatatnnnnnnnnnnnnnnnccaagaataatgattgtcattttacaacagatcaggaaactgaaatctgtcacttaatgttacgaagttaaactc 318  Q
    ||||||||||               |||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  35745187 tgtgacatataaaaaaaaaaaa---ccaagaataatgattgtcattttacaacaga---ggaaactgaaatctgtcacttaatgttacgaagttaaactc 35745280  T
Q  319 ttattatgtcacatacctcgcgcaaggaagcagaactgttacatggagctaagtccatgatatctctgaatgccatgatcttcgtatgaatctctaccat 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35745281 ttattatgtcacatacctcgcgcaaggaagcagaactgttacatggagctaagtccatgatatctctgaatgccatgatcttcatatgaatctctaccat 35745380  T
Q  419 taaaatcaattggtctgctcctacgaatgataactccattgactctccattttctttgctctgagcctttg------------------aagacttctta 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||    
T  35745381 taaaatcaattggtctgctcctacgaatgataactccattgactctccattttctttgctctgagcctttgaagacttcttaggtgtgcaagacttctta 35745480  T
Q  501 ggtgtgctagagccttttatcactttcagtccctgcaagtgcttatataatatcaattaatagtgcctaggatatctcagatagataggtaatgctagac 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  35745481 ggtgtgctagagccttttatcactttcagtccctgcaagtgcttatataatatcaattaatagtgcctaggatatctcagatagataggtaatgctaagc 35745580  T
Q  601 ttccaacatcttctgcatgtcttgtctttcaatgttattcatctcact 648  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  35745581 ttccaacatcttctgcatgtcttgtctttcaatgttattcatgtcact 35745628  T

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