View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19932_high_20 (Length: 404)
Name: NF19932_high_20
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19932_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 183 - 348
Target Start/End: Original strand, 32487286 - 32487459
Alignment:
| Q |
183 |
ggtagatagatgaattgacaatagtcatcgtaaactcacaaacacaagtgaagaagtcggggttcgaaaccccaatcacggagtccggcctaacattttc |
282 |
Q |
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| T |
32487286 |
ggtagatagatgaattgacaatagtcatcgtaaactcacaaacacaagtgaagaagttggggttcaaaaccccaatcacggcgtccagcctaacgttttc |
32487385 |
T |
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| Q |
283 |
t--------ctagagagtttgttattactaaatatagtgaatgttgaatattttttaagaaaaatatggaaaac |
348 |
Q |
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| T |
32487386 |
tcatttgagctagagagtttgttattactaaatatagtgaatgttgaatattttttaagaaaaatatggaaaac |
32487459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 32486650 - 32486837
Alignment:
| Q |
1 |
ttagcgtaattataattggatcaagtttaaacatgaataccggtagtgaacacattttggtcctctcgatctcatgt---------------------ta |
79 |
Q |
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| T |
32486650 |
ttagcgtaattataattggatcaagtttaaacatgaataccggtagtgaacacattttggtcctctcgatctcatgttataacgaatcaaaaaaatgtta |
32486749 |
T |
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| Q |
80 |
taacgaaccaaatttgaa-------taggagaaaaagaattgaattgtttgttccataccaagtatatgaaacacgttcaatttgaaa |
160 |
Q |
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| T |
32486750 |
taacgaaccaaatttgaatagtgaataggagaaaaagaattgaattgtttgttccataccaagtacatgaaacacgttcaatttgaaa |
32486837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 128
Target Start/End: Original strand, 32489522 - 32489634
Alignment:
| Q |
12 |
ataattggatcaagtttaaacatgaataccggtagtgaacacattttggtcctctcgatctcatgttataacgaaccaaatttgaataggagaaaaa--g |
109 |
Q |
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| T |
32489522 |
ataattggatcaagtttaaacaagaatactagtagtgaacaaagtttggt------tttctcatattataacacaccaaatttgaataggaaaaaaaatg |
32489615 |
T |
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| Q |
110 |
aattgaattgtttgttcca |
128 |
Q |
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| T |
32489616 |
aattgaattgtttgatcca |
32489634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 282
Target Start/End: Original strand, 52492681 - 52492777
Alignment:
| Q |
184 |
gtagatagatgaattgacaatagtcatcgtaaactcacaaacacaagtgaagaagtcggggttcgaaaccccaatcacggagtccggcctaacattttc |
282 |
Q |
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| T |
52492681 |
gtagatagacgaaatgataa-agtcattataaactcacacacacaagtgaagaaaccggggttcg-aaccccaatcatgacatccggcctaacaatttc |
52492777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 31507913 - 31507849
Alignment:
| Q |
183 |
ggtagatagatgaattgacaatagtcatcgtaaactcacaaacacaagtgaagaagtcggggttc |
247 |
Q |
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| T |
31507913 |
ggtagatagatgaaatgacaatagtcattggaaattcagacacacaagtggagaagtcagggttc |
31507849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 37054779 - 37054815
Alignment:
| Q |
214 |
aaactcacaaacacaagtgaagaagtcggggttcgaa |
250 |
Q |
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| T |
37054779 |
aaactcacaaacacaagtgaagaagttggggttcgaa |
37054815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 282
Target Start/End: Complemental strand, 24638082 - 24637986
Alignment:
| Q |
184 |
gtagatagatgaattgacaatagtcatcgtaaactcacaaacacaagtgaagaagtcggggttcgaaaccccaatcacggagtccggcctaacattttc |
282 |
Q |
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| T |
24638082 |
gtagatagacgaaatgataa-agtcattataaactcacacacacaagtgaagaaaccggggttcg-aaccccaatcatgacatccggcctaacaatttc |
24637986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 341
Target Start/End: Original strand, 23959250 - 23959283
Alignment:
| Q |
308 |
atagtgaatgttgaatattttttaagaaaaatat |
341 |
Q |
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| T |
23959250 |
atagtgaatgttgaatatttgttaagaaaaatat |
23959283 |
T |
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