View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19932_high_21 (Length: 396)
Name: NF19932_high_21
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19932_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 4 - 386
Target Start/End: Original strand, 800184 - 800567
Alignment:
| Q |
4 |
tgagttaacttacgaaccctttcaaaaataaataaaactgaactaaagatatgaccaacttgcatatggattgaatggagctttcaaacccaccggttca |
103 |
Q |
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| T |
800184 |
tgagttaacttacgaaccctttcaaaagtaaataaaactgaactaaagatatgaccaacttgcatatgaattgaatggagctttcaaacccaccagtcca |
800283 |
T |
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| Q |
104 |
ccttctcatctgcaaaatgacgttagataaataatccacaaactccctcaacacaacatacaaacaaaataaatacttttgagggtattaattgacacta |
203 |
Q |
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| T |
800284 |
ccttctcatatgcaaaatgacgttagataaattatccacaaactccctcaacacaacatacaaacaaaataaatacttttgagggtattaattaacacta |
800383 |
T |
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| Q |
204 |
tatgtttaaaatagtacactcaaatttaagcatcacaactttataaacaaaagttgaacacgtgagataacattgcatacaacacaaccataccccaaac |
303 |
Q |
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| T |
800384 |
tatgtttaaaatagtacactcaaatttaagcatcacaactttataaacaaaagttgaacacgtgagataacattgcatacaacacaaccataccccaaac |
800483 |
T |
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| Q |
304 |
tcataatgaaaaccaaagattaatttatttgctattc-nnnnnnntattaccatgcaaaatttattttgtttctttttaaaaac |
386 |
Q |
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| T |
800484 |
tcataatgaaaaccaaagattaatttatttgctattcaaaaaaaatattaccatgcaaaatttattttgtttctttttaaaaac |
800567 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 35120318 - 35120241
Alignment:
| Q |
77 |
aatggagctttcaaacccaccggttcaccttctcatc-tgcaaaatgacgttagataaataatccacaaactccctca |
153 |
Q |
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| T |
35120318 |
aatgaagcttccaaacccactcgtccaccatctcatcctgcaaaacatcgttagataaataatccacatactccctca |
35120241 |
T |
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