View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19932_high_26 (Length: 363)
Name: NF19932_high_26
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19932_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 46489042 - 46489370
Alignment:
| Q |
1 |
aaaggcttgaggatcccaaacaacaaagctattgttccctgtactccatgaaactatatgatttgtggaaggatcatcaactatatcatatgtttttgtg |
100 |
Q |
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| T |
46489042 |
aaaggcttgaggatcccaaacaacaaagctattgttccctgtactccatgaaactatatgatttgtggaaggatcatcaactatatcatatgtttttgtg |
46489141 |
T |
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| Q |
101 |
aggaatggtggaggaccattttcatgaagtccttcccttggttgaggttcaccaaccacagaaaaggaagaacttcctcctacaaattcctccttcattc |
200 |
Q |
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| T |
46489142 |
aggaatggtggaggaccattttcatgaagtccttcccttggttgaggttcaccaaccacagaaaaggaagaacttcctcctacaaattcctccttcattc |
46489241 |
T |
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| Q |
201 |
caccatgatgaggattcatattcataaaaaggatctggtttggcaagtagggtttgaataatgagaacttaaactaaatagactgatcacgattactaaa |
300 |
Q |
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| T |
46489242 |
caccatgatgaggattcatattcataaaaaggatctggtttggcaagtagggtttgaataatgagaacttaaactaaatagactgatcatgattactaaa |
46489341 |
T |
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| Q |
301 |
cataataggaaaatcagatcatatcatga |
329 |
Q |
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| T |
46489342 |
cataataggaaaatcagatcatatcatga |
46489370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 31664943 - 31665015
Alignment:
| Q |
72 |
gatcatcaactatatcatatgtttttgtgaggaatggtggaggaccattttcatgaagtccttcccttggttg |
144 |
Q |
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| T |
31664943 |
gatcatcaactacatcaaatgtttttgtgaggaatggttgtggcctaatttcattaagtccttcatttggttg |
31665015 |
T |
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