View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19932_high_33 (Length: 306)

Name: NF19932_high_33
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19932_high_33
NF19932_high_33
[»] chr1 (3 HSPs)
chr1 (18-293)||(2068176-2068451)
chr1 (36-97)||(40847517-40847578)
chr1 (186-295)||(40847678-40847790)
[»] chr5 (13 HSPs)
chr5 (183-295)||(34678437-34678549)
chr5 (183-295)||(34648994-34649106)
chr5 (188-295)||(34685603-34685713)
chr5 (18-289)||(34430510-34430794)
chr5 (18-96)||(34678670-34678748)
chr5 (18-102)||(18270770-18270854)
chr5 (34-110)||(34422254-34422330)
chr5 (188-295)||(18270579-18270689)
chr5 (18-110)||(34685805-34685897)
chr5 (18-97)||(27842449-27842528)
chr5 (190-287)||(34422417-34422517)
chr5 (188-295)||(27842640-27842750)
chr5 (18-101)||(34649196-34649279)


Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 2068176 - 2068451
Alignment:
Q  18 atcttgtactccagctgtgtccttaagaaaagagaacatgccctttgctgcaggggctttctccaatatactattttaatcaaaataaccaaattattct 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2068176 atcttgtactccagctgtgtccttaagaaaagagaacatgccctttgctgcaggggctttctccaatatactatttcaatcaaaataaccaaattattct 2068275  T
Q  118 ttaacttacacaatctctttcaaactgacaattaacggaaagtgaaaacacaaacacnnnnnnntatatcaaacttacatagtgtagaacaaaacactat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  2068276 ttaacttacacaatctctttcaaactgacaattaacggaaagtgaaaacacaaacacaaaaaaatatatcaaacttacatagtgtagaacaaaacactat 2068375  T
Q  218 taccagggttttgtttaaatgattcccatgagctattcactaaagcctcttgtttctctgtgaaacccatatctct 293  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2068376 taccagggttttgtttaaataattcccatgagctattcactaaagcctcttgtttctctgtaaaacccatatctct 2068451  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 40847517 - 40847578
Alignment:
Q  36 gtccttaagaaaagagaacatgccctttgctgcaggggctttctccaatatactattttaat 97  Q
    |||||| |||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||    
T  40847517 gtcctttagaaaagaaaacatgccttttgctgcaggtgctttatccaatatactattttaat 40847578  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 295
Target Start/End: Original strand, 40847678 - 40847790
Alignment:
Q  186 tcaaacttacatagtgtagaacaaaacactattaccagg---gttttgtttaaatgattcccatgagctattcactaaagcctcttgtttctctgtgaaa 282  Q
    |||||||||||  |||||||||||||||||||    |||   |||||| || || | ||||||||||||| | || |||||||||||| |||| ||||||    
T  40847678 tcaaacttacaaggtgtagaacaaaacactatagaaaggaaggttttgattgaaggtttcccatgagctactaaccaaagcctcttgtctctcagtgaaa 40847777  T
Q  283 cccatatctctct 295  Q
    ||||||| |||||    
T  40847778 cccatatttctct 40847790  T

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Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 183 - 295
Target Start/End: Complemental strand, 34678549 - 34678437
Alignment:
Q  183 atatcaaacttacatagtgtagaacaaaacactattaccagggttttgtttaaatgattcccatgagctattcactaaagcctcttgtttctctgtgaaa 282  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||  |||||||||| |||||||||||||||||||| ||||||    
T  34678549 atatcaaacttacatagtgtagaacaaaacactataaccaggattttgtttaaatgattcgaatgagctatttactaaagcctcttgtttctcggtgaaa 34678450  T
Q  283 cccatatctctct 295  Q
    ||||||| |||||    
T  34678449 cccatatttctct 34678437  T

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Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 183 - 295
Target Start/End: Complemental strand, 34649106 - 34648994
Alignment:
Q  183 atatcaaacttacatagtgtagaacaaaacactattaccagggttttgtttaaatgattcccatgagctattcactaaagcctcttgtttctctgtgaaa 282  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||| || |||||||||||||||||||||||||| ||||||    
T  34649106 atatcaaacgtacatagtgtagaacaaaacactataaccagggttttgtttaagtgattcccaagaactattcactaaagcctcttgtttctcggtgaaa 34649007  T
Q  283 cccatatctctct 295  Q
    | ||||| |||||    
T  34649006 ctcatatttctct 34648994  T

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Target: chr5; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 188 - 295
Target Start/End: Complemental strand, 34685713 - 34685603
Alignment:
Q  188 aaacttacatagtgtagaacaaaacactattaccagg---gttttgtttaaatgattcccatgagctattcactaaagcctcttgtttctctgtgaaacc 284  Q
    |||||||| |||||||||| ||||||||||  |||||   ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34685713 aaacttacgtagtgtagaagaaaacactatagccaggaaggttttgtttgaatgattcccatgagctattcactaaagcctcttgattctctgtgaaacc 34685614  T
Q  285 catatctctct 295  Q
    ||||| |||||    
T  34685613 catatttctct 34685603  T

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Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 34430510 - 34430794
Alignment:
Q  18 atcttgtactccagctgtgtccttaagaaaagagaacatgccctttgctgcaggggctttctccaatatactattttaatcaaaataaccaa-attattc 116  Q
    |||||||||||||| ||| || |||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| ||||||| ||||||   |||||    
T  34430510 atcttgtactccagttgtatctttaagaaaagagaacatgccttttgctgcaggtgctttctctaatatactatttttatcaaaacaaccaagcatattc 34430609  T
Q  117 t------ttaacttacacaatctctttcaaactgacaattaacggaaagtgaaaacacaaacacnnnnnnnt---atatcaaacttacatagtgtagaac 207  Q
    |      |||| ||||   |||||||| | ||||||||| |||  |||  ||||||| || ||        |   | || ||||||||||||| ||||||    
T  34430610 ttgctaattaatttactttatctcttttatactgacaatcaacaaaaatggaaaacataatcaaacattcatgagaaataaaacttacatagtatagaac 34430709  T
Q  208 aaaacactattaccag---ggttttgtttaaatgattcccatgagctattcactaaagcctcttgtttctctgtgaaacccatat 289  Q
    ||||||||||  ||||   | |||||||| |||||||||||||| ||||||||||||| |||||| ||||| |||||||||||||    
T  34430710 aaaacactatagccagagagattttgtttgaatgattcccatgaactattcactaaagactcttgcttctcggtgaaacccatat 34430794  T

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Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 34678748 - 34678670
Alignment:
Q  18 atcttgtactccagctgtgtccttaagaaaagagaacatgccctttgctgcaggggctttctccaatatactattttaa 96  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||    
T  34678748 atcttgtactccagctgagtccttaagaaaagagaacataccctttgctgcaggtgctttctccaatatactgttttaa 34678670  T

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Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 18270854 - 18270770
Alignment:
Q  18 atcttgtactccagctgtgtccttaagaaaagagaacatgccctttgctgcaggggctttctccaatatactattttaatcaaaa 102  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||| ||||    
T  18270854 atcttgtactccagctgaatccttaagaaaagagaacatgccctttgctgcaggtgctttgtctaatatactattttaataaaaa 18270770  T

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Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 34422254 - 34422330
Alignment:
Q  34 gtgtccttaagaaaagagaacatgccctttgctgcaggggctttctccaatatactattttaatcaaaataaccaaa 110  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||    
T  34422254 gtgttcttaagaaaagagaacatgccctttgctgcaggtgctttctctaatatactaatttaatcaaaataaccaaa 34422330  T

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Target: chr5; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 188 - 295
Target Start/End: Complemental strand, 18270689 - 18270579
Alignment:
Q  188 aaacttacatagtgtagaacaaaacactat---taccagggttttgtttaaatgattcccatgagctattcactaaagcctcttgtttctctgtgaaacc 284  Q
    |||||||||||||||||||||||||||| |   ||  | ||||||||||||||| ||||||||||||||| |||||||||||||| || || ||||||||    
T  18270689 aaacttacatagtgtagaacaaaacactgtatttaggaaggttttgtttaaatgcttcccatgagctattaactaaagcctcttggttttcggtgaaacc 18270590  T
Q  285 catatctctct 295  Q
    ||||| |||||    
T  18270589 catatttctct 18270579  T

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Target: chr5; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 34685897 - 34685805
Alignment:
Q  18 atcttgtactccagctgtgtccttaagaaaagagaacatgccctttgctgcaggggctttctccaatatactattttaatcaaaataaccaaa 110  Q
    |||||||||||| | || ||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||| |||  |||||||    
T  34685897 atcttgtactcccgttgagtccttaagaaaagagaacataccctttgctgcaggtgctttctctaatatactattttaattaaagcaaccaaa 34685805  T

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Target: chr5; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 27842449 - 27842528
Alignment:
Q  18 atcttgtactccagctgtgtccttaagaaaagagaacatgccctttgctgcaggggctttctccaatatactattttaat 97  Q
    ||||||||||||||||| |||||||||||||||||||| ||| ||||| ||||| |||||||| ||||| ||||||||||    
T  27842449 atcttgtactccagctgagtccttaagaaaagagaacaagccttttgccgcaggtgctttctctaatatgctattttaat 27842528  T

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Target: chr5; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 190 - 287
Target Start/End: Original strand, 34422417 - 34422517
Alignment:
Q  190 acttacatagtgtagaacaaaacactattaccaggg---ttttgtttaaatgattcccatgagctattcactaaagcctcttgtttctctgtgaaaccca 286  Q
    |||||||||||||||||||| |||||||  || ||    ||||||||||||||||||||||||||||||||||||  |||||| ||||| ||||| ||||    
T  34422417 acttacatagtgtagaacaagacactatagccgggaagattttgtttaaatgattcccatgagctattcactaaaaactcttgcttctcagtgaatccca 34422516  T
Q  287 t 287  Q
    |    
T  34422517 t 34422517  T

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Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 295
Target Start/End: Original strand, 27842640 - 27842750
Alignment:
Q  188 aaacttacatagtgtagaacaaaacactattaccag---ggttttgtttaaatgattcccatgagctattcactaaagcctcttgtttctctgtgaaacc 284  Q
    ||||||||| ||||||||| |||||||||| |||||   |||||||||| ||||  ||  |||||||||| ||||||||||| ||||| || |||||||     
T  27842640 aaacttacacagtgtagaaaaaaacactataaccagaaaggttttgtttgaatgcctcatatgagctattgactaaagcctcctgtttatcagtgaaact 27842739  T
Q  285 catatctctct 295  Q
    ||||| |||||    
T  27842740 catatttctct 27842750  T

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Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 34649279 - 34649196
Alignment:
Q  18 atcttgtactccagctgtgtccttaagaaaagagaacatgccctttgctgcaggggctttctccaatatactattttaatcaaa 101  Q
    ||||||||||||||  | | |||| |||||||||| |||  |||||| |||||| |||||||| ||||||||||||||||||||    
T  34649279 atcttgtactccagtcgagcccttcagaaaagagagcatatcctttgttgcaggtgctttctcaaatatactattttaatcaaa 34649196  T

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