View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19932_high_43 (Length: 266)

Name: NF19932_high_43
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19932_high_43
NF19932_high_43
[»] chr6 (16 HSPs)
chr6 (19-257)||(9549000-9549237)
chr6 (10-257)||(13566409-13566654)
chr6 (10-257)||(13570956-13571201)
chr6 (88-256)||(13575492-13575659)
chr6 (88-256)||(13578031-13578198)
chr6 (88-257)||(19566532-19566701)
chr6 (88-246)||(19768706-19768864)
chr6 (88-209)||(12980139-12980260)
chr6 (88-257)||(19564887-19565056)
chr6 (88-241)||(14993772-14993924)
chr6 (90-210)||(19893196-19893314)
chr6 (100-155)||(15285468-15285523)
chr6 (152-241)||(15285685-15285774)
chr6 (8-70)||(13465949-13466011)
chr6 (10-52)||(19893356-19893398)
chr6 (167-203)||(26935330-26935366)
[»] chr2 (5 HSPs)
chr2 (10-257)||(20263276-20263522)
chr2 (88-244)||(27386600-27386756)
chr2 (88-209)||(32623248-32623367)
chr2 (88-210)||(16093850-16093969)
chr2 (10-70)||(42553533-42553593)
[»] chr8 (7 HSPs)
chr8 (10-257)||(42147699-42147945)
chr8 (14-196)||(9883980-9884161)
chr8 (10-210)||(17290913-17291112)
chr8 (92-210)||(6465954-6466072)
chr8 (101-241)||(22609908-22610046)
chr8 (94-244)||(40391666-40391814)
chr8 (88-167)||(15113573-15113649)
[»] chr7 (13 HSPs)
chr7 (18-227)||(33721545-33721752)
chr7 (10-237)||(11799664-11799891)
chr7 (14-246)||(18147206-18147437)
chr7 (100-246)||(3311208-3311354)
chr7 (88-246)||(3312928-3313086)
chr7 (88-225)||(34707378-34707516)
chr7 (104-203)||(11315763-11315862)
chr7 (90-210)||(32945635-32945753)
chr7 (88-227)||(11508357-11508494)
chr7 (88-155)||(22949366-22949433)
chr7 (14-72)||(22529556-22529614)
chr7 (174-247)||(21508816-21508889)
chr7 (10-71)||(11508275-11508336)
[»] chr5 (7 HSPs)
chr5 (10-246)||(21143501-21143735)
chr5 (10-216)||(39176711-39176917)
chr5 (88-241)||(32951787-32951939)
chr5 (88-241)||(26758339-26758491)
chr5 (88-210)||(32039918-32040038)
chr5 (136-210)||(26658869-26658943)
chr5 (136-210)||(26930458-26930532)
[»] scaffold0281 (1 HSPs)
scaffold0281 (14-207)||(2150-2342)
[»] chr4 (11 HSPs)
chr4 (13-209)||(18873864-18874061)
chr4 (88-257)||(13883936-13884105)
chr4 (88-244)||(23974432-23974588)
chr4 (88-241)||(21414966-21415119)
chr4 (14-246)||(11154071-11154301)
chr4 (93-208)||(19611554-19611669)
chr4 (100-210)||(15706954-15707064)
chr4 (88-210)||(14646078-14646197)
chr4 (168-210)||(13165445-13165487)
chr4 (10-175)||(25125838-25126002)
chr4 (22-70)||(15709488-15709536)
[»] chr3 (13 HSPs)
chr3 (12-246)||(39727337-39727565)
chr3 (88-245)||(18534079-18534236)
chr3 (88-247)||(3593369-3593528)
chr3 (88-241)||(12150576-12150728)
chr3 (90-236)||(30992961-30993105)
chr3 (88-234)||(12154660-12154805)
chr3 (93-210)||(18705183-18705298)
chr3 (125-210)||(3290957-3291042)
chr3 (119-241)||(10341391-10341511)
chr3 (90-197)||(15777021-15777126)
chr3 (120-241)||(10303054-10303173)
chr3 (126-196)||(3483954-3484024)
chr3 (88-227)||(9733272-9733409)
[»] scaffold0323 (1 HSPs)
scaffold0323 (14-210)||(16589-16784)
[»] chr1 (11 HSPs)
chr1 (88-195)||(91930-92037)
chr1 (88-209)||(21499016-21499137)
chr1 (12-227)||(12786547-12786761)
chr1 (14-244)||(23631782-23632012)
chr1 (100-246)||(52274603-52274747)
chr1 (127-240)||(18513504-18513616)
chr1 (125-197)||(9131369-9131441)
chr1 (95-210)||(41136552-41136667)
chr1 (127-246)||(12483981-12484101)
chr1 (166-203)||(21494118-21494155)
chr1 (12-40)||(52274808-52274836)
[»] scaffold0978 (1 HSPs)
scaffold0978 (88-210)||(3089-3211)
[»] scaffold0019 (1 HSPs)
scaffold0019 (81-210)||(183234-183363)
[»] scaffold0394 (1 HSPs)
scaffold0394 (100-241)||(7154-7294)
[»] scaffold0005 (1 HSPs)
scaffold0005 (88-210)||(171093-171212)
[»] scaffold0364 (1 HSPs)
scaffold0364 (95-176)||(14932-15013)
[»] scaffold0088 (1 HSPs)
scaffold0088 (125-244)||(35210-35330)


Alignment Details
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 9549237 - 9549000
Alignment:
Q  19 gaaagtagatgagttggttagtcggttaaagagtatgaaaaaataatgtttaggnnnnnnnntaaagtgtttagagagaaaaagaaagtagagtgtgaac 118  Q
    ||||||||||| ||||||||||||||||||||||| || |||||||||||||||        |||||| |||||||||||||||||||||||||||||||    
T  9549237 gaaagtagatgtgttggttagtcggttaaagagtaggagaaaataatgtttaggaaaaaaa-taaagtttttagagagaaaaagaaagtagagtgtgaac 9549139  T
Q  119 ggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggaggtgtgaatagctaggtgat 218  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9549138 ggaggtggattagtaaaattgggtagaaaagaggtgtagttagtgagctgagtagtgttttaatgatttaaggagagggaggtgtgaatagctaggtgat 9549039  T
Q  219 gtagttacaagaagaataataacaaaatttaaaggtaca 257  Q
    |||||||||||||||||| ||||||||| || |||||||    
T  9549038 gtagttacaagaagaatagtaacaaaatctagaggtaca 9549000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 10 - 257
Target Start/End: Complemental strand, 13566654 - 13566409
Alignment:
Q  10 aggtaaggagaaagtagatgagttggttagtcggttaaagagtatgaaaaaataatgtttaggnnnnnnnntaaagtgtttagagagaaaaagaaagtag 109  Q
    |||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||        |||| | ||||||||||||||||||||||    
T  13566654 aggtaaggagaaagtagatgggttggttagtcggttaaagagtaggagaaaataatgtttaggaagaaaa-taaaatttttagagagaaaaagaaagtag 13566556  T
Q  110 agtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggaggtgtgaatag 209  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  13566555 agtgtgaacggaggtggattagtaaaatttggtagaaaagaggtgtagttagtgagctgagtagtgtttt-atgatttacgcagagggaggtgtgaatag 13566457  T
Q  210 ctaggtgatgtagttacaagaagaataataacaaaatttaaaggtaca 257  Q
    |||||||||||||| |||||||||||| |||||||||||| |||||||    
T  13566456 ctaggtgatgtagtaacaagaagaatagtaacaaaatttagaggtaca 13566409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 10 - 257
Target Start/End: Complemental strand, 13571201 - 13570956
Alignment:
Q  10 aggtaaggagaaagtagatgagttggttagtcggttaaagagtatgaaaaaataatgtttaggnnnnnnnntaaagtgtttagagagaaaaagaaagtag 109  Q
    |||||||||||||||| |||||||||||||||||||  |||||| || |||||||||||||||        |||| | |||||||||||||||| |||||    
T  13571201 aggtaaggagaaagtaaatgagttggttagtcggttttagagtaggagaaaataatgtttaggaagaaaa-taaaatttttagagagaaaaagagagtag 13571103  T
Q  110 agtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggaggtgtgaatag 209  Q
    ||||||||||||||||||||||||||||| || ||||||||||||| ||||||||| |||||| |||||| |||||||||||||||||||||||||||||    
T  13571102 agtgtgaacggaggtggattagtaaaatttggaagaaaagaggtgtagttagtgagatgagtaatgtttt-atgatttaagcagagggaggtgtgaatag 13571004  T
Q  210 ctaggtgatgtagttacaagaagaataataacaaaatttaaaggtaca 257  Q
    |||||||||||||| |||||||||||| |||||||||||| |||||||    
T  13571003 ctaggtgatgtagtaacaagaagaatagtaacaaaatttagaggtaca 13570956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 88 - 256
Target Start/End: Complemental strand, 13575659 - 13575492
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgattt 187  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||    
T  13575659 tttagagagaaaaagaaagttaagtgtgaacggaggtggattagtaaaatttggtagaaaagaggtgtagttagtgagctgagtagtgtttt-atgattt 13575561  T
Q  188 aagcagagggaggtgtgaatagctaggtgatgtagttacaagaagaataataacaaaatttaaaggtac 256  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||    
T  13575560 aagcagagggaggtgtgaatagctaggtgatgtagtaacaagaagaatagtaacaaaatttagaggtac 13575492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 88 - 256
Target Start/End: Complemental strand, 13578198 - 13578031
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgattt 187  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||    
T  13578198 tttagagagaaaaagaaagttaagtgtgaacggaggtggattagtaaaatttggtagaaaagaggtgtagttagtgagctgagtagtgtttt-atgattt 13578100  T
Q  188 aagcagagggaggtgtgaatagctaggtgatgtagttacaagaagaataataacaaaatttaaaggtac 256  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||    
T  13578099 aagcagagggaggtgtgaatagctaggtgatgtagtaacaagaagaatagtaacaaaatttagaggtac 13578031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 88 - 257
Target Start/End: Original strand, 19566532 - 19566701
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgattt 187  Q
    |||||| |||| |||||||||||||| |||||||||||||||||||||||||  ||||||||| |||| |||||| ||||||||||||||||||||||||    
T  19566532 tttagatagaataagaaagtagagtgcgaacggaggtggattagtaaaattgaatagaaaagaagtgtagttagtcagctgagtagtgttttaatgattt 19566631  T
Q  188 aagcagagggaggtgtgaatagctaggtgatgtagttacaagaagaataataacaaaatttaaaggtaca 257  Q
    ||| ||||||||||||||||||  ||||| ||||||||  ||||||||| |||||||| ||| |||||||    
T  19566632 aagtagagggaggtgtgaatagaaaggtggtgtagttaagagaagaatagtaacaaaaattagaggtaca 19566701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 88 - 246
Target Start/End: Original strand, 19768706 - 19768864
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgattt 187  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||    
T  19768706 tttagagagaataagaaagtagagtatgaacggaggtgaattagtaaaattggatagaaaagaggtgtagttagtgagctgagtagtgttttaattattt 19768805  T
Q  188 aagcagagggaggtgtgaatagctaggtgatgtagttacaagaagaataataacaaaat 246  Q
    ||| ||||||  ||||||||||| ||  | || |||||| | ||||||| |||||||||    
T  19768806 aagtagaggggagtgtgaatagcaagtcggtgcagttactaaaagaatagtaacaaaat 19768864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 88 - 209
Target Start/End: Original strand, 12980139 - 12980260
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgattt 187  Q
    ||||||||||| ||||||||||||||  | | ||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||| |||||||||||    
T  12980139 tttagagagaataagaaagtagagtgccagcagaggtggattagtaaaattggatagaaaagaggtgtagttagtgagatgagtagtgctttaatgattt 12980238  T
Q  188 aagcagagggaggtgtgaatag 209  Q
    ||||||||||  ||||||||||    
T  12980239 aagcagaggggagtgtgaatag 12980260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 88 - 257
Target Start/End: Original strand, 19564887 - 19565056
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgattt 187  Q
    ||||||||||| ||||||||||||||  ||||||||||||||| ||||||||  ||||||||| |||| | |||||| |||||||   ||||||||||||    
T  19564887 tttagagagaataagaaagtagagtgcaaacggaggtggattactaaaattgaatagaaaagaagtgtagctagtgacctgagtatcattttaatgattt 19564986  T
Q  188 aagcagagggaggtgtgaatagctaggtgatgtagttacaagaagaataataacaaaatttaaaggtaca 257  Q
    ||| ||||||||||||||||||  ||||| ||||||||  ||||||||  |||||||| ||| |||||||    
T  19564987 aagtagagggaggtgtgaatagaaaggtggtgtagttaggagaagaatggtaacaaaaattagaggtaca 19565056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 88 - 241
Target Start/End: Complemental strand, 14993924 - 14993772
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgattt 187  Q
    |||||| |||| |||||||||||||| ||||||| |||||||||||||||||  ||| |||||||||| ||| | ||   ||||||||||||||||||||    
T  14993924 tttagaaagaataagaaagtagagtgcgaacggaagtggattagtaaaattga-taggaaagaggtgtagtttgagaatggagtagtgttttaatgattt 14993826  T
Q  188 aagcagagggaggtgtgaatagctaggtgatgtagttacaagaagaataataac 241  Q
    ||||||||||||||||||||||  ||  ||||||||||||| ||||| ||||||    
T  14993825 aagcagagggaggtgtgaatagaaagacgatgtagttacaacaagaagaataac 14993772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 210
Target Start/End: Complemental strand, 19893314 - 19893196
Alignment:
Q  90 tagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaa 189  Q
    |||||| || |||||| ||||||| ||||||  | |||| |||||||||||| |||||||  |||| ||||||||| ||||||||  |||||||||||||    
T  19893314 tagagaaaataagaaattagagtgcgaacgg--gaggatcagtaaaattgggaagaaaagttgtgtagttagtgagatgagtagtactttaatgatttaa 19893217  T
Q  190 gcagagggaggtgtgaatagc 210  Q
    | ||||||  |||||||||||    
T  19893216 gtagaggggagtgtgaatagc 19893196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 15285468 - 15285523
Alignment:
Q  100 aagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgt 155  Q
    |||||||||||||||||||| | ||| ||||||||||||| |||||||||||||||    
T  15285468 aagaaagtagagtgtgaacgaaagtgaattagtaaaattgagtagaaaagaggtgt 15285523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 241
Target Start/End: Original strand, 15285685 - 15285774
Alignment:
Q  152 gtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggaggtgtgaatagctaggtgatgtagttacaagaagaataataac 241  Q
    |||| |||||||||| || |||||||||||||| |||| |||| ||||||||||||||| |||   |||||||||||  |||||| ||||    
T  15285685 gtgtagttagtgagccgattagtgttttaatgacttaatcagaaggaggtgtgaatagcaaggcagtgtagttacaacgagaatagtaac 15285774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 13466011 - 13465949
Alignment:
Q  8 aaaggtaaggagaaagtagatgagttggttagtcggttaaagagtatgaaaaaataatgttta 70  Q
    |||||||||||||||||||| | ||||||| ||||||||||| ||  || |||||||||||||    
T  13466011 aaaggtaaggagaaagtagacgggttggtttgtcggttaaagggtgggagaaaataatgttta 13465949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 19893398 - 19893356
Alignment:
Q  10 aggtaaggagaaagtagatgagttggttagtcggttaaagagt 52  Q
    |||||| ||||||||||||| |||||||||||| |||||||||    
T  19893398 aggtaatgagaaagtagatgggttggttagtcgtttaaagagt 19893356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 26935366 - 26935330
Alignment:
Q  167 tgagtagtgttttaatgatttaagcagagggaggtgt 203  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  26935366 tgagtagtgttttaatgatctaagcagaaggaggtgt 26935330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 10 - 257
Target Start/End: Original strand, 20263276 - 20263522
Alignment:
Q  10 aggtaaggagaaagtagatgagttggttagtcggttaaagagtatgaaaaaataatgtttaggnnnnnnnntaaagtgtttagagagaaaaagaaagtag 109  Q
    |||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||        || ||| |||||||||||||||||||||     
T  20263276 aggtaaggagaaagtagatgggttggttagtcggttaaagagtaggagaaaataatgtttaggaaaaaaa-tagagtttttagagagaaaaagaaagtaa 20263374  T
Q  110 agtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggaggtgtgaatag 209  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  20263375 agtgcgaacggaggtgaattagtaaaattgggtagaaaagaggtgtagttagtgagctgagaagtgttttaatgacttaagcagagggaggtgtgaatag 20263474  T
Q  210 ctaggtgatgtagttacaagaagaataataacaaaatttaaaggtaca 257  Q
    |||||||||||||||| |||||| |||  ||||||||||| |||||||    
T  20263475 ctaggtgatgtagttagaagaagtatataaacaaaatttagaggtaca 20263522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 88 - 244
Target Start/End: Original strand, 27386600 - 27386756
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgattt 187  Q
    ||||||||||| || ||| ||||||| ||||||||||| |||||||||||| |||||||| ||||||| ||||||||| ||||||||| |||||| ||||    
T  27386600 tttagagagaataataaaatagagtgcgaacggaggtgaattagtaaaatttggtagaaatgaggtgtagttagtgagatgagtagtgctttaataattt 27386699  T
Q  188 aagcagagggaggtgtgaatagctaggtgatgtagttacaagaagaataataacaaa 244  Q
    ||| || |||  ||||||||||| ||  ||||||||||||  || |||| |||||||    
T  27386700 aagtagtggggagtgtgaatagcaagacgatgtagttacagaaataatagtaacaaa 27386756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 209
Target Start/End: Original strand, 32623248 - 32623367
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgattt 187  Q
    |||||| |||| || ||| ||||||| |||||| ||  ||||||||| ||| |||||||||||||||| ||||||||| ||||||||| |||||||||||    
T  32623248 tttagaaagaataataaattagagtgcgaacggggg--gattagtaacattaggtagaaaagaggtgtagttagtgagatgagtagtgctttaatgattt 32623345  T
Q  188 aagcagagggaggtgtgaatag 209  Q
    ||| ||||||  ||||||||||    
T  32623346 aagtagaggggagtgtgaatag 32623367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 210
Target Start/End: Complemental strand, 16093969 - 16093850
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgattt 187  Q
    ||||||||||| |||||| ||||||| || |||   ||||||| ||||||||||||||| |||||||| |||| |||| ||||||||| |||||||| ||    
T  16093969 tttagagagaataagaaattagagtgcgagcgg---tggattaataaaattgggtagaatagaggtgtagttaatgagatgagtagtgctttaatgagtt 16093873  T
Q  188 aagcagagggaggtgtgaatagc 210  Q
    ||| ||||||  |||||||||||    
T  16093872 aagtagaggggagtgtgaatagc 16093850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 42553533 - 42553593
Alignment:
Q  10 aggtaaggagaaagtagatgagttggttagtcggttaaagagtatgaaaaaataatgttta 70  Q
    |||||||||| | ||||||| || |||||||||||||||||||  || |||||||||||||    
T  42553533 aggtaaggagcatgtagatgggtcggttagtcggttaaagagtgagagaaaataatgttta 42553593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 5e-68; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 10 - 257
Target Start/End: Complemental strand, 42147945 - 42147699
Alignment:
Q  10 aggtaaggagaaagtagatgagttggttagtcggttaaagagtatgaaaaaataatgtttaggnnnnnnnntaaagtgtttagagagaaaaagaaagtag 109  Q
    ||||||||||||| |||||  || |||||||||||||||||||| || ||||||||||||| |        || ||| ||||||||||| || |||||||    
T  42147945 aggtaaggagaaattagattggtgggttagtcggttaaagagtaagagaaaataatgtttatgaagaata-tagagtttttagagagaataataaagtag 42147847  T
Q  110 agtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggaggtgtgaatag 209  Q
    ||||  ||||||||| ||||||||||||| | ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42147846 agtgcaaacggaggttgattagtaaaatttgatagaaaagatgtgtagttagtgagctgagtagtgttttaatgatttaagcagagggaggtgtgaatag 42147747  T
Q  210 ctaggtgatgtagttacaagaagaataataacaaaatttaaaggtaca 257  Q
    ||||||| |||||||||| |||||||| |||||||||||| |||||||    
T  42147746 ctaggtgttgtagttacacgaagaatagtaacaaaatttagaggtaca 42147699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 9884161 - 9883980
Alignment:
Q  14 aaggagaaagtagatgagttggttagtcggttaaagagtatgaaaaaataatgtttaggnnnnnnnntaaagtgtttagagagaaaaagaaagtagagtg 113  Q
    |||||||||||| ||| ||||||||||| ||||||||||  || |||||||||||||||        || ||| ||||||||||| |||||||||||| |    
T  9884161 aaggagaaagtaaatgggttggttagtcagttaaagagtgagagaaaataatgtttaggaagaaaa-tagagtttttagagagaataagaaagtagagag 9884063  T
Q  114 tgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagg 196  Q
    |||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||| | |||||||||||||    
T  9884062 tgaacggaggtgaattagtaaaattggttagaaaagaggtgtagttagtgagctgagtagtgttttagttatttaagcagagg 9883980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 10 - 210
Target Start/End: Complemental strand, 17291112 - 17290913
Alignment:
Q  10 aggtaaggagaaagtagatgagttggttagtcggttaaagagtatgaaaaaataatgtttaggnnnnnnnntaaagtgtttagagagaaaaagaaagtag 109  Q
    |||||||||| | ||||||| ||||||||||||||||||||||  || |||||||| |||| |        || ||| |||||| |||| ||||||||||    
T  17291112 aggtaaggagcatgtagatgtgttggttagtcggttaaagagtgagagaaaataatatttaagaagaaaa-tagagtttttagatagaataagaaagtag 17291014  T
Q  110 agtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggaggtgtgaatag 209  Q
    |||| | |   ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||| ||||||||||||||||||||| ||||||    
T  17291013 agtgcgtataaaggtggattagtaaaattgggtagaaaagagatgtagttagtgagctgagtagtgctttattgatttaagcagagggaggtgcgaatag 17290914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 92 - 210
Target Start/End: Complemental strand, 6466072 - 6465954
Alignment:
Q  92 gagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagc 191  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||  ||||| || |||| ||||||||||||||||||||    
T  6466072 gagagaataagaaagtagagtgcgaacggaggtggattagtaaaattaggtagaaaagaggtgtaattagtaagatgagaagtgttttaatgatttaagc 6465973  T
Q  192 agagggaggtgtgaatagc 210  Q
    ||||||  |||| ||||||    
T  6465972 agaggggagtgtaaatagc 6465954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 241
Target Start/End: Original strand, 22609908 - 22610046
Alignment:
Q  101 agaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggagg 200  Q
    ||||||||||||| ||||||| |||||||||||||||| ||||| ||||| || | ||| |||| | |||| || ||||||||||||||||||||| |||    
T  22609908 agaaagtagagtgcgaacggaagtggattagtaaaatt-ggtaggaaaga-gtatagtttgtgaacggagtggtattttaatgatttaagcagaggaagg 22610005  T
Q  201 tgtgaatagctaggtgatgtagttacaagaagaataataac 241  Q
    |||||||||| |   | ||||||||||| ||||| ||||||    
T  22610006 tgtgaatagcaatacggtgtagttacaacaagaacaataac 22610046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 94 - 244
Target Start/End: Complemental strand, 40391814 - 40391666
Alignment:
Q  94 gagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcag 193  Q
    ||||| |||||| ||||||| |||||| |||| |||||||||||||||| |||| ||||||| ||||||||| |||||| |  |||||||||||||| ||    
T  40391814 gagaataagaaattagagtgcgaacgg-ggtg-attagtaaaattgggttgaaatgaggtgtagttagtgagatgagtaatactttaatgatttaagtag 40391717  T
Q  194 agggaggtgtgaatagctaggtgatgtagttacaagaagaataataacaaa 244  Q
    ||||  ||||||||| | ||  | ||||||||||| || |||| |||||||    
T  40391716 aggggagtgtgaataacaagacggtgtagttacaaaaataatagtaacaaa 40391666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 15113649 - 15113573
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagct 167  Q
    ||||||||||| |||||| ||||||||||||||  |   ||||||||||||||||||||||| ||||| |||||||||||    
T  15113649 tttagagagaataagaaattagagtgtgaacgggag---attagtaaaattgggtagaaaagtggtgtagttagtgagct 15113573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 227
Target Start/End: Complemental strand, 33721752 - 33721545
Alignment:
Q  18 agaaagtagatgagttggttagtcggttaaagagtatgaaaaaataatgtttaggnnnnnnnntaaagtgtttagagagaaaaagaaagtagagtgtgaa 117  Q
    |||||||||||||||||||||||||||||||||||  || |||||||||||||||        || |||  |||||||||||||||||||||||||||||    
T  33721752 agaaagtagatgagttggttagtcggttaaagagtgagagaaaataatgtttaggaataaaa-tagagttcttagagagaaaaagaaagtagagtgtgaa 33721654  T
Q  118 cggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggaggtgtgaatagctaggtga 217  Q
    |||||||||||||| |||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||| ||| |||| |||||||||||||||||    
T  33721653 cggaggtggattag-aaaattgggtagaaaagatgtgtagttagtaagctgagtagtgttttaatgatttaagtagaaggagatgtgaatagctaggtga 33721555  T
Q  218 tgtagttaca 227  Q
    ||||||||||    
T  33721554 tgtagttaca 33721545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 11799664 - 11799891
Alignment:
Q  10 aggtaaggagaaagtagatgagttggttagtcggttaaagagtatgaaaaaataatgtttaggnnnnnnnntaaagtgtttagagagaaaaagaaagtag 109  Q
    ||||||||||||| | |||| ||||||||| | |||||||||   || |||||||||||||||        || ||| | |||| |||| ||||||||||    
T  11799664 aggtaaggagaaaatggatgggttggttaggccgttaaagagcgggacaaaataatgtttaggaagaaaaatatagtttatagaaagaataagaaagtag 11799763  T
Q  110 agtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggaggtgtgaatag 209  Q
    | || |||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||| |||||||||||||    
T  11799764 attgcgaacggaggtggatcagtaaaattgggtagaaaagaggtgtagttagtgagatgagtattgttttaatgatttaagcagagagaggtgtgaatag 11799863  T
Q  210 ctaggtgatgtagttacaagaagaataa 237  Q
    | |||   || |||||||| ||||||||    
T  11799864 caaggcagtgaagttacaacaagaataa 11799891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 18147206 - 18147437
Alignment:
Q  14 aaggagaaagtagatgagttggttagtcggttaaagagtatgaaaaaataatgtttaggnnnnnnnntaaagtgtttagagagaaaaagaaagtagagtg 113  Q
    |||||||||||| ||| ||||||||||| |||||||||   || |||||||||||||||        || ||| ||||||||||| ||||||||||||||    
T  18147206 aaggagaaagtaaatgggttggttagtcagttaaagagggagagaaaataatgtttaggaagaaaa-tagagtttttagagagaataagaaagtagagtg 18147304  T
Q  114 tgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggaggtgtgaatagctag 213  Q
    |||||||||||| |||||||||||||| ||||||||| |||| || ||||||||||||||||||||||| ||||||| ||||||  ||||||||||| ||    
T  18147305 tgaacggaggtgaattagtaaaattggatagaaaagatgtgtagtgagtgagctgagtagtgttttaattatttaagtagaggggagtgtgaatagcaag 18147404  T
Q  214 gtgatgtagttacaagaagaataataacaaaat 246  Q
      | |||||||||   ||||||| |||||||||    
T  18147405 tcggtgtagttactgaaagaatagtaacaaaat 18147437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 100 - 246
Target Start/End: Complemental strand, 3311354 - 3311208
Alignment:
Q  100 aagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggag 199  Q
    ||||||||||| || ||||||||||||||||| |||||||||||||||| |||| | |||||| || ||| |||| ||||||||||||||||||| ||||    
T  3311354 aagaaagtagaatgcgaacggaggtggattagcaaaattgggtagaaaaaaggtatagttagttagatgaatagtattttaatgatttaagcagaaggag 3311255  T
Q  200 gtgtgaatagctaggtgatgtagttacaagaagaataataacaaaat 246  Q
    ||||||||||| | ||||||||||||||  ||||||| || ||||||    
T  3311254 gtgtgaatagcaaagtgatgtagttacagaaagaatagtagcaaaat 3311208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 88 - 246
Target Start/End: Complemental strand, 3313086 - 3312928
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgattt 187  Q
    |||||||| || ||||||||||| || ||||||||||||||||| |||||||| ||||||| |||| | ||| ||||||||| |||| ||||||||||||    
T  3313086 tttagagaaaataagaaagtagaatgcgaacggaggtggattagcaaaattggatagaaaaaaggtatagttcgtgagctgaatagtattttaatgattt 3312987  T
Q  188 aagcagagggaggtgtgaatagctaggtgatgtagttacaagaagaataataacaaaat 246  Q
    || |||| ||||||||||||||| |  |||||||||||||  ||||||| || ||||||    
T  3312986 aatcagaaggaggtgtgaatagcaaattgatgtagttacagaaagaatagtagcaaaat 3312928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 88 - 225
Target Start/End: Complemental strand, 34707516 - 34707378
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgattt 187  Q
    ||||||||||| |||||||||||||| ||| ||||||||||| ||||||||  |||||||||| |||| ||||||||||| |||||||||||||||||||    
T  34707516 tttagagagaataagaaagtagagtgcgaatggaggtggatttgtaaaattttgtagaaaagaagtgtagttagtgagctcagtagtgttttaatgattt 34707417  T
Q  188 aagcagagggaggtgtgaata-gctaggtgatgtagtta 225  Q
    ||||||||  |||||||| || || ||||| ||||||||    
T  34707416 aagcagagaaaggtgtgagtacgcaaggtggtgtagtta 34707378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 104 - 203
Target Start/End: Complemental strand, 11315862 - 11315763
Alignment:
Q  104 aagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggaggtgt 203  Q
    ||||||||||||||||||||||||||||||||||||  | |||||||  ||| |||||||||||||||||||||||||||||||||| ||||||| ||||    
T  11315862 aagtagagtgtgaacggaggtggattagtaaaattgaattgaaaagaaatgtagttagtgagctgagtagtgttttaatgatttaagtagagggatgtgt 11315763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 90 - 210
Target Start/End: Complemental strand, 32945753 - 32945635
Alignment:
Q  90 tagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaa 189  Q
    |||||| || |||||| ||||||| ||||||  | |||| |||||||||||| ||||||||||||| ||||||||| ||||||||  |||||||||||||    
T  32945753 tagagaaaataagaaattagagtgagaacgg--gaggatcagtaaaattgggaagaaaagaggtgtagttagtgagatgagtagtactttaatgatttaa 32945656  T
Q  190 gcagagggaggtgtgaatagc 210  Q
    | ||||||  |||||||||||    
T  32945655 gtagaggggagtgtgaatagc 32945635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 227
Target Start/End: Original strand, 11508357 - 11508494
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgattt 187  Q
    |||||||| || |||||| ||||||| ||||||  | |||| ||||||||||||  |||||||||||| |||||||||  |||||||  |||||||||||    
T  11508357 tttagagaaaataagaaattagagtgcgaacgg--gaggatcagtaaaattgggatgaaaagaggtgtagttagtgagacgagtagtactttaatgattt 11508454  T
Q  188 aagcagagggaggtgtgaatagctaggtgatgtagttaca 227  Q
    ||| ||| ||  ||||||||||| ||| | ||||| ||||    
T  11508455 aagtagatgggagtgtgaatagcaaggcggtgtagctaca 11508494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 155
Target Start/End: Complemental strand, 22949433 - 22949366
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgt 155  Q
    ||||||||||| ||||||||| ||||  |||||||||| ||| ||||||||||| | |||||||||||    
T  22949433 tttagagagaataagaaagtaaagtgcaaacggaggtgaattcgtaaaattgggcaaaaaagaggtgt 22949366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 22529556 - 22529614
Alignment:
Q  14 aaggagaaagtagatgagttggttagtcggttaaagagtatgaaaaaataatgtttagg 72  Q
    |||||||||||| ||| ||||||||||| ||||||||||  || |||||||||||||||    
T  22529556 aaggagaaagtaaatgggttggttagtcagttaaagagtgagagaaaataatgtttagg 22529614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 21508889 - 21508816
Alignment:
Q  174 tgttttaatgatttaagcagagggaggtgtgaatagctaggtgatgtagttacaagaagaataataacaaaatt 247  Q
    |||||||| ||||||||||||||||||||| || ||| |||   ||||||| ||| |||||||||||| |||||    
T  21508889 tgttttaaagatttaagcagagggaggtgtaaacagcaaggctgtgtagttgcaaaaagaataataactaaatt 21508816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 11508275 - 11508336
Alignment:
Q  10 aggtaaggagaaagtagatgagttggttagtcggttaaagagtatgaaaaaataatgtttag 71  Q
    |||||| |||||| |||||| |||||||||||| |||||||||  || |||||||| |||||    
T  11508275 aggtaatgagaaaatagatgggttggttagtcgtttaaagagtgagagaaaataatatttag 11508336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 10 - 246
Target Start/End: Original strand, 21143501 - 21143735
Alignment:
Q  10 aggtaaggagaaagtagatgagttggttagtcggttaaagagtatgaaaaaataatgtttaggnnnnnnnntaaagtgtttagagagaaaaagaaagtag 109  Q
    |||||| ||||||||||||||||||||||||||||||||||||  || ||||||||||||||         || ||| ||||||||||| ||||||||||    
T  21143501 aggtaatgagaaagtagatgagttggttagtcggttaaagagtgagagaaaataatgtttag-aaagaaaatagagtttttagagagaataagaaagtag 21143599  T
Q  110 agtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggaggtgtgaatag 209  Q
    |||| ||||||| |||||||||||||||| ||||||||| |||||| |||||||| ||||||| |||||||||||||||||||||| || ||||||||||    
T  21143600 agtgcgaacggatgtggattagtaaaattaggtagaaaa-aggtgtagttagtgaactgagtattgttttaatgatttaagcagagtgatgtgtgaatag 21143698  T
Q  210 ctaggtgatgtagttacaagaagaataataacaaaat 246  Q
    | ||||| | ||||||||| ||||||| |||||||||    
T  21143699 caaggtggtatagttacaaaaagaatattaacaaaat 21143735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 39176917 - 39176711
Alignment:
Q  10 aggtaaggagaaagtagatgagttggttagtcggttaaagagtatgaaaaaataatgtttaggnnnnnnnntaaagtgtttagagagaaaaagaaagtag 109  Q
    ||||||||||||| |||||  || ||||||||||||||||||   || |||||||||||||||        | |  | ||||||||||| ||||||||||    
T  39176917 aggtaaggagaaaatagattggtgggttagtcggttaaagagcgagagaaaataatgtttaggaagaaaa-tgatttttttagagagaataagaaagtag 39176819  T
Q  110 agtgtgaacggaggtggattagtaaaattggg-tagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggaggtgtgaata 208  Q
    |||| ||||||||||||||||||||| || || ||||||||| |||| ||||||||| || |||||||||||||||||||||| ||||||||||||||||    
T  39176818 agtgcgaacggaggtggattagtaaattttggatagaaaagatgtgtagttagtgagttgggtagtgttttaatgatttaagcggagggaggtgtgaata 39176719  T
Q  209 gctaggtg 216  Q
    ||||||||    
T  39176718 gctaggtg 39176711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 88 - 241
Target Start/End: Complemental strand, 32951939 - 32951787
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgattt 187  Q
    |||||| |||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||| | ||||||| |||||||||||||||||||||    
T  32951939 tttagaaagaaaaagaaagtagattgcgaacggaggtggattagtaaaattgggaagaaaagaggtgtag-tagtgagatgagtagtgttttaatgattt 32951841  T
Q  188 aagcagagggaggtgtgaatagctaggtgatgtagttacaagaagaataataac 241  Q
    || |||||||| ||||||||||| ||| |  | |||||||| ||||||| ||||    
T  32951840 aaacagagggatgtgtgaatagcaaggcggagaagttacaacaagaatagtaac 32951787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 88 - 241
Target Start/End: Original strand, 26758339 - 26758491
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgattt 187  Q
    |||||| |||| ||||||||| |||| ||||||| |||||||||||||||||| ||| |||||||||| ||| |||| |  |||||||||||||||||||    
T  26758339 tttagaaagaataagaaagtaaagtgcgaacggaagtggattagtaaaattgg-taggaaagaggtgtagtttgtgaacgaagtagtgttttaatgattt 26758437  T
Q  188 aagcagagggaggtgtgaatagctaggtgatgtagttacaagaagaataataac 241  Q
    |||||||||| |||||||||||| ||  | ||||||||||| ||||| ||||||    
T  26758438 aagcagaggggggtgtgaatagcaagacggtgtagttacaacaagaacaataac 26758491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 210
Target Start/End: Complemental strand, 32040038 - 32039918
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgattt 187  Q
    ||||||||||| |||||| ||||||| |||||| ||  ||||||||||||||||||||||||| |||| |||||  || ||||||||| |||||||||||    
T  32040038 tttagagagaataagaaattagagtgcgaacggggg--gattagtaaaattgggtagaaaagatgtgtagttagcaagatgagtagtgctttaatgattt 32039941  T
Q  188 aagcagagggaggtgtgaatagc 210  Q
    ||| ||||||  |||||||||||    
T  32039940 aagtagaggggagtgtgaatagc 32039918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 26658943 - 26658869
Alignment:
Q  136 attgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggaggtgtgaatagc 210  Q
    |||||||||||||||||||| || |||||| ||||||||| |||||||||||||| ||||||  |||| ||||||    
T  26658943 attgggtagaaaagaggtgtagtaagtgagatgagtagtgctttaatgatttaagtagaggggagtgtaaatagc 26658869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 26930532 - 26930458
Alignment:
Q  136 attgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggaggtgtgaatagc 210  Q
    |||||||||||||||||||| || |||||| ||||||||| |||||||||||||| ||||||  |||| ||||||    
T  26930532 attgggtagaaaagaggtgtagtaagtgagatgagtagtgctttaatgatttaagtagaggggagtgtaaatagc 26930458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 2342 - 2150
Alignment:
Q  14 aaggagaaagtagatgagttggttagtcggttaaagagtatgaaaaaataatgtttaggnnnnnnnntaaagtgtttagagagaaaaagaaagtagagtg 113  Q
    |||||||||||| ||| ||||||||||||||||||||||  || |||||||||||||||        || ||| ||||||||||| ||||||||||||||    
T  2342 aaggagaaagtaaatgggttggttagtcggttaaagagtgagagaaaataatgtttaggaagaaaa-tagagtttttagagagaataagaaagtagagtg 2244  T
Q  114 tgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggaggtgtgaat 207  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||  ||||||||    
T  2243 tgaacggaggtgaattagtaaaattgggtagaaaagaggtgtagttagtgaggtgagtagtgttttaattatttaagcagaggggagtgtgaat 2150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 18874061 - 18873864
Alignment:
Q  13 taaggagaaagtagatgagttggttagtcggttaaagagtatgaaaaaataatgtttaggnnnnnnnntaa-agtgtttagagagaaaaagaaagtagag 111  Q
    ||||||||||||||||| ||| ||| ||||||||||||||  || ||||||||||||||          || ||| ||||||||||| |||| |||||||    
T  18874061 taaggagaaagtagatgggttagttggtcggttaaagagtgggagaaaataatgtttagaaaaaaaaaaaagagtttttagagagaataagagagtagag 18873962  T
Q  112 tgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggaggtgtgaatag 209  Q
    ||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  18873961 tgtgaacagaggtggattagtaaaattaggtagaaaagaggtgtagttagtgagctgagtagtgttttaatgatttaagtagagggaggtgagaatag 18873864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 88 - 257
Target Start/End: Original strand, 13883936 - 13884105
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgattt 187  Q
    ||||||||||| |||||||||||||| |||||| ||||||||||||||||||  | |||||||  ||| |||||||| ||||||||||||||||||||||    
T  13883936 tttagagagaataagaaagtagagtgcgaacgggggtggattagtaaaattgaatggaaaagaattgtagttagtgaactgagtagtgttttaatgattt 13884035  T
Q  188 aagcagagggaggtgtgaatagctaggtgatgtagttacaagaagaataataacaaaatttaaaggtaca 257  Q
    ||| ||||| ||||||||| ||  ||||| ||||||||| ||||||||| |||||||| ||| |||||||    
T  13884036 aagtagaggaaggtgtgaaaagaaaggtggtgtagttacgagaagaatagtaacaaaaattagaggtaca 13884105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 88 - 244
Target Start/End: Complemental strand, 23974588 - 23974432
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgattt 187  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||| |||||||||||||||| ||||    
T  23974588 tttagagagaataagaaagtagagtgtgaacggaggtgaattagtaaaattggttagaaaagaggtgtggttagtgagttgagtagtgttttaattattt 23974489  T
Q  188 aagcagagggaggtgtgaatagctaggtgatgtagttacaagaagaataataacaaa 244  Q
    ||||| ||||  ||||||||||| ||  | |||||||||   ||||||| |||||||    
T  23974488 aagcataggggagtgtgaatagcaagacggtgtagttactgaaagaatagtaacaaa 23974432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 88 - 241
Target Start/End: Original strand, 21414966 - 21415119
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgattt 187  Q
    |||||| |||| ||||||||||| ||||||| |||||||||| ||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||    
T  21414966 tttagaaagaataagaaagtagattgtgaacagaggtggattggtaaaattgggaagaaaagaggtgtagttagtgagatgagtagtgttttaatgattt 21415065  T
Q  188 aagcagagggaggtgtgaatagctaggtgatgtagttacaagaagaataataac 241  Q
    || || |||||||| |||||||||||| |  | |||||||| ||||||| ||||    
T  21415066 aaacatagggaggtatgaatagctaggcggagaagttacaacaagaatagtaac 21415119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 14 - 246
Target Start/End: Complemental strand, 11154301 - 11154071
Alignment:
Q  14 aaggagaaagtagatgagttggttagtcggttaaagagtatgaaaaaataatgtttaggnnnnnnnntaaagtgtttagagagaaaaagaaagtagagtg 113  Q
    |||||||||||| ||| ||||||||||| || |||| ||  || |||||||||||||||        || ||| |||| |||||| ||||||||||||||    
T  11154301 aaggagaaagtaaatgggttggttagtcagtgaaagggtgagagaaaataatgtttaggaagaaaa-tagagtttttaaagagaataagaaagtagagtg 11154203  T
Q  114 tgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggaggtgtgaatagctag 213  Q
    | |||||||||| ||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| |||| || ||||||  ||||||||||| ||    
T  11154202 tcaacggaggtgaattagtaaaat-gggtagaaaagaggtgtagttagtgagttgagtagtgttttaattattttagtagaggggagtgtgaatagcaag 11154104  T
Q  214 gtgatgtagttacaagaagaataataacaaaat 246  Q
    | | |||| ||||   |||||||||||||||||    
T  11154103 gcggtgtaattactgaaagaataataacaaaat 11154071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 93 - 208
Target Start/End: Original strand, 19611554 - 19611669
Alignment:
Q  93 agagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagca 192  Q
    |||||| |||||||||||||  |||| ||| ||||| ||||||||| | |||||||||||||| ||||||||| ||||||||| ||||||||||||||||    
T  19611554 agagaataagaaagtagagtacgaacagagatggataagtaaaattagatagaaaagaggtgtagttagtgagatgagtagtgctttaatgatttaagca 19611653  T
Q  193 gagggaggtgtgaata 208  Q
    |||||  |||||||||    
T  19611654 gaggggagtgtgaata 19611669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 100 - 210
Target Start/End: Complemental strand, 15707064 - 15706954
Alignment:
Q  100 aagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggag 199  Q
    |||||||||||||| | |   |||||| |||||||||||||||||||||||||||| |||| |||| | |||||||||||| ||||||||||| ||||||    
T  15707064 aagaaagtagagtgcgtatataggtgggttagtaaaattgggtagaaaagaggtgtagttaatgagttaagtagtgttttattgatttaagcatagggag 15706965  T
Q  200 gtgtgaatagc 210  Q
    |||||||||||    
T  15706964 gtgtgaatagc 15706954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 88 - 210
Target Start/End: Complemental strand, 14646197 - 14646078
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgattt 187  Q
    |||| |||||| |||||| ||||||| |||||| |||   |||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||    
T  14646197 tttaaagagaataagaaattagagtgcgaacgggggt---ttagtaaaattgggtagaaaagaggtgtagttagtgagatgagtagtgctttaatgattt 14646101  T
Q  188 aagcagagggaggtgtgaatagc 210  Q
    ||| ||| ||  |||||||||||    
T  14646100 aagtagatgggagtgtgaatagc 14646078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 13165487 - 13165445
Alignment:
Q  168 gagtagtgttttaatgatttaagcagagggaggtgtgaatagc 210  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  13165487 gagtagtgttttaatgatttaagtagagggaggtgtgaatagc 13165445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 175
Target Start/End: Original strand, 25125838 - 25126002
Alignment:
Q  10 aggtaaggagaaagtagatgagttggttagtcggttaaagagtatgaaaaaataatgtttaggnnnnnnnntaaag-tgtttagagagaaaaagaaagta 108  Q
    |||||| |||||||||||||||||||||||||| |||||||||  || |||||||| |||| |        || || | ||||||||||| || ||| ||    
T  25125838 aggtaatgagaaagtagatgagttggttagtcgtttaaagagtgagagaaaataatattta-gaaagaaaatatagttttttagagagaataaaaaatta 25125936  T
Q  109 gagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtg 175  Q
    | ||||| ||  ||| |||||||||||||||||||||||||| ||||  ||| |||| |||||||||    
T  25125937 gcgtgtgcac-cagggggattagtaaaattgggtagaaaagatgtgtatttaatgagatgagtagtg 25126002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 15709536 - 15709488
Alignment:
Q  22 agtagatgagttggttagtcggttaaagagtatgaaaaaataatgttta 70  Q
    |||||||| |||||||||||||||||| | || || |||||||||||||    
T  15709536 agtagatgggttggttagtcggttaaaaaataagagaaaataatgttta 15709488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 39727337 - 39727565
Alignment:
Q  12 gtaaggagaaagtagatgagttggttagtcggttaaagagtatgaaaaaataatgtttaggnnnnnnnntaaagtgtttagagagaaaaagaaagtagag 111  Q
    |||||||||||||| ||| ||||||||||| ||||||||||  || |||||||||||||||        || ||| ||||||||||| ||||||||||||    
T  39727337 gtaaggagaaagtaaatgggttggttagtctgttaaagagtgagagaaaataatgtttaggaagaaaa-tagagtttttagagagaataagaaagtagag 39727435  T
Q  112 tgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggaggtgtgaatagct 211  Q
    |||||||||||||| ||||||||||    ||| ||||||||||| |||||||||||||||||||||||||| ||||||| ||||||  |||||||||||     
T  39727436 tgtgaacggaggtgaattagtaaaa----gtaaaaaagaggtgtagttagtgagctgagtagtgttttaattatttaagtagaggggagtgtgaatagca 39727531  T
Q  212 aggtgatgtagttacaagaagaataataacaaaat 246  Q
    ||| | ||||||||| | |||||||||||||||||    
T  39727532 aggcggtgtagttacga-aagaataataacaaaat 39727565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 88 - 245
Target Start/End: Original strand, 18534079 - 18534236
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgattt 187  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||| |  |   |||||| ||||||||||||||||||||||    
T  18534079 tttagagagaataagaaagtagagtatgaacggaggtgaattagtaaaattgggtagaaaagatgcataactagtgatctgagtagtgttttaatgattt 18534178  T
Q  188 aagcagagggaggtgtgaatagctaggtgatgtagttacaagaagaataataacaaaa 245  Q
    ||||||| ||||||  |||||||||| | ||||||||||| |||||||||||||||||    
T  18534179 aagcagatggaggtaagaatagctagataatgtagttacaggaagaataataacaaaa 18534236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 88 - 247
Target Start/End: Complemental strand, 3593528 - 3593369
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgattt 187  Q
    ||||||||||| |||||||||||||| ||| ||||||  | || ||||||| ||||||||||| |||| ||||||||||||||||||||||| |||||||    
T  3593528 tttagagagaataagaaagtagagtgcgaatggaggttaactaataaaattaggtagaaaagatgtgtagttagtgagctgagtagtgttttgatgattt 3593429  T
Q  188 aagcagagggaggtgtgaatagctaggtgatgtagttacaagaagaataataacaaaatt 247  Q
    |||||||| || |||||||||||||||||||||||||| | |||||||| || |||||||    
T  3593428 aagcagagagatgtgtgaatagctaggtgatgtagttaaaggaagaatagtatcaaaatt 3593369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 88 - 241
Target Start/End: Original strand, 12150576 - 12150728
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgattt 187  Q
    |||||| |||| ||||||||||| || ||||||| |||||||||||||||||| ||  |||||||||| ||| |||| | ||||||||||||||||||||    
T  12150576 tttagaaagaataagaaagtagactgcgaacggaagtggattagtaaaattgg-tatgaaagaggtgtagtttgtgaacggagtagtgttttaatgattt 12150674  T
Q  188 aagcagagggaggtgtgaatagctaggtgatgtagttacaagaagaataataac 241  Q
    ||||||||||||||||||||||| ||  | ||||||||||| ||||| ||||||    
T  12150675 aagcagagggaggtgtgaatagcaagacggtgtagttacaacaagaacaataac 12150728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 30992961 - 30993105
Alignment:
Q  90 tagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaa 189  Q
    ||||||||| |||||| ||||||| |||||||||| | ||||||||| || ||||||||||||||| |||| |||||||| |||||||||||||||||||    
T  30992961 tagagagaataagaaaatagagtgcgaacggaggtagcttagtaaaactgagtagaaaagaggtgtagttaatgagctgattagtgttttaatgatttaa 30993060  T
Q  190 gcagagggaggtgtgaatagctaggtgatgtagttacaagaagaata 236  Q
    ||| |  |||||||||||||| ||||| ||||||||||  |||||||    
T  30993061 gcaaa--gaggtgtgaatagcaaggtggtgtagttacagaaagaata 30993105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 88 - 234
Target Start/End: Original strand, 12154660 - 12154805
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgattt 187  Q
    |||||| |||| ||||||||| |||| ||||||| |||||||||||||||||| |||  |||| |||| ||| |||| | ||||||||||||||||||||    
T  12154660 tttagaaagaataagaaagtaaagtgcgaacggaagtggattagtaaaattgg-tagggaagatgtgtagtttgtgaacggagtagtgttttaatgattt 12154758  T
Q  188 aagcagagggaggtgtgaatagctaggtgatgtagttacaagaagaa 234  Q
    |||||||||| |||||||||||| ||  | ||||||||||| |||||    
T  12154759 aagcagagggtggtgtgaatagcaagacggtgtagttacaacaagaa 12154805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 93 - 210
Target Start/End: Original strand, 18705183 - 18705298
Alignment:
Q  93 agagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagca 192  Q
    |||||| ||||||||||||||||||||| ||  ||||| ||||||||| |||||||||||||| ||||||||| |||||| || |||||||||||||  |    
T  18705183 agagaataagaaagtagagtgtgaacggggg--gattaataaaattggatagaaaagaggtgtagttagtgagatgagtaatgctttaatgatttaaata 18705280  T
Q  193 gagggaggtgtgaatagc 210  Q
    |||||  |||||||||||    
T  18705281 gaggggagtgtgaatagc 18705298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 125 - 210
Target Start/End: Complemental strand, 3291042 - 3290957
Alignment:
Q  125 ggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggaggtgtgaatagc 210  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||  |||| |  |||||||||||    
T  3291042 ggattagtaaaattgggtagaaaagaggtgtagttagtgagatgagcagtgttttaatgatttaaatagagaggagtgtgaatagc 3290957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 119 - 241
Target Start/End: Complemental strand, 10341511 - 10341391
Alignment:
Q  119 ggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggaggtgtgaatagctaggtgat 218  Q
    |||| ||| ||||||||||||| ||||||||||||   ||||||||| |||||||||||||||||| ||||||||| |||||||||| |||| |||   |    
T  10341511 ggagatggtttagtaaaattggatagaaaagaggta--gttagtgagatgagtagtgttttaatgaattaagcagaaggaggtgtgagtagcaaggcagt 10341414  T
Q  219 gtagttacaagaagaataataac 241  Q
    | |||||||| ||||||| ||||    
T  10341413 gaagttacaacaagaatagtaac 10341391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 197
Target Start/End: Original strand, 15777021 - 15777126
Alignment:
Q  90 tagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaa 189  Q
    ||||||||| |||||| |||||||  ||||| ||  |||||||||||||||||||||||||||||| |||||  || ||||||||  |||||||||||||    
T  15777021 tagagagaataagaaattagagtgcaaacggggg--gattagtaaaattgggtagaaaagaggtgtagttagcaagatgagtagtactttaatgatttaa 15777118  T
Q  190 gcagaggg 197  Q
    | ||||||    
T  15777119 gtagaggg 15777126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 241
Target Start/End: Complemental strand, 10303173 - 10303054
Alignment:
Q  120 gaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggaggtgtgaatagctaggtgatg 219  Q
    ||||||| || |||||||||| ||||||||||||   ||||||||| |||||||||||||||||| ||||||| | |||||||||| |||| ||| |  |    
T  10303173 gaggtggtttggtaaaattggatagaaaagaggta--gttagtgagatgagtagtgttttaatgaattaagcataaggaggtgtgagtagcaaggcggcg 10303076  T
Q  220 tagttacaagaagaataataac 241  Q
     |||||||| ||||||| ||||    
T  10303075 aagttacaacaagaatagtaac 10303054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 3484024 - 3483954
Alignment:
Q  126 gattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagg 196  Q
    ||||||||||||||| ||||||| | |||| ||||||||| |||||| || |||||||||||||| |||||    
T  3484024 gattagtaaaattggatagaaaatatgtgtagttagtgagatgagtaatgctttaatgatttaagtagagg 3483954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 227
Target Start/End: Original strand, 9733272 - 9733409
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgattt 187  Q
    |||||||| || |||||| ||||||| | ||||  | |||| |||||| |||||  ||||| ||||||  ||||||||  |||||||  |||||||||||    
T  9733272 tttagagaaaataagaaattagagtgcggacgg--gaggatcagtaaagttgggatgaaaataggtgtaattagtgagacgagtagtactttaatgattt 9733369  T
Q  188 aagcagagggaggtgtgaatagctaggtgatgtagttaca 227  Q
    ||| ||| ||  ||||||||||| ||| | ||||| ||||    
T  9733370 aagtagatgggagtgtgaatagcaaggcggtgtagctaca 9733409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 16784 - 16589
Alignment:
Q  14 aaggagaaagtagatgagttggttagtcggttaaagagtatgaaaaaataatgtttaggnnnnnnnntaaagtgtttagagagaaaaagaaagtagagtg 113  Q
    |||||||||||| ||| ||| ||||||  ||||||||||  || |||||||||||||||        || ||| ||||||||||| ||||||||||||||    
T  16784 aaggagaaagtaaatgggttagttagttagttaaagagtgagagaaaataatgtttaggaagaaaa-tagagtttttagagagaataagaaagtagagtg 16686  T
Q  114 tgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggaggtgtgaatagc 210  Q
    ||||| |||||| ||||||||||||||||| ||||||||||| ||||||||| |||||||||||||| | ||||||||| ||||  |||||||||||    
T  16685 tgaacagaggtgaattagtaaaattgggtataaaagaggtgtagttagtgagttgagtagtgttttacttatttaagcaaaggggagtgtgaatagc 16589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 88 - 195
Target Start/End: Complemental strand, 92037 - 91930
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgattt 187  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||  |||||||| |||||||||||||||||||||    
T  92037 tttagagagaataagaaagtagagtgtgaacggaggtggattagtaaaattgggtagtatagaggtgtatttagtgagatgagtagtgttttaatgattt 91938  T
Q  188 aagcagag 195  Q
    ||| ||||    
T  91937 aagtagag 91930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 88 - 209
Target Start/End: Complemental strand, 21499137 - 21499016
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgattt 187  Q
    |||||| |||| ||||||||||| || |||| ||| ||||||||||||||| |||||||||||||||| ||||| ||||| |||||||||||||||||||    
T  21499137 tttagaaagaataagaaagtagattgcgaacagagatggattagtaaaattaggtagaaaagaggtgtagttagggagctaagtagtgttttaatgattt 21499038  T
Q  188 aagcagagggaggtgtgaatag 209  Q
    |||||||| || ||||||||||    
T  21499037 aagcagagagatgtgtgaatag 21499016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 12786761 - 12786547
Alignment:
Q  12 gtaaggagaaagtagatgagttggttagtcggttaaagagtatgaaaaaataatgtttaggnnnnnnnntaaagtgttt--agagagaaaaagaaagtag 109  Q
    ||||||||||||||||||||||||||||||| |||||||||  ||||||||||| |||           || ||| |||  |||||||| |||||| |||    
T  12786761 gtaaggagaaagtagatgagttggttagtcgattaaagagtgagaaaaaataatattttc-aaagaaaatagagtttttttagagagaataagaaattag 12786663  T
Q  110 agtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggaggtgtgaatag 209  Q
    |||||||||  ||| || |||||||||||||||||||||||||||| ||||||||| ||||||||| ||||| |||||||  |||||   ||||||||||    
T  12786662 agtgtgaac--aggggggttagtaaaattgggtagaaaagaggtgtagttagtgagatgagtagtgctttaaagatttaactagaggagagtgtgaatag 12786565  T
Q  210 ctaggtgatgtagttaca 227  Q
    | ||  |||||| |||||    
T  12786564 caagacgatgtaattaca 12786547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 23631782 - 23632012
Alignment:
Q  14 aaggagaaagtagatgagttggttagtcggttaaagagtatgaaaaaataatgtttaggnnnnnnnntaaagtgtttagagagaaaaagaaagtagagtg 113  Q
    |||||||||||| ||| ||||||||| | ||||||||||  || |||||||||||||||        || ||| || |||||||| |||||| ||||  |    
T  23631782 aaggagaaagtaaatgggttggttagccagttaaagagtgagagaaaataatgtttaggaagaaaa-tagagttttcagagagaataagaaaatagatcg 23631880  T
Q  114 tgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcaga-gggaggtgtgaatagcta 212  Q
    |||||||||||| |||||||||||||| |||||||||||||| |||| |||| | || |||| |||||||||||||| ||| | |  ||||||||||| |    
T  23631881 tgaacggaggtgaattagtaaaattggatagaaaagaggtgtagttaatgagattagcagtgctttaatgatttaagtagatgaggagtgtgaatagcaa 23631980  T
Q  213 ggtgatgtagttacaagaagaataataacaaa 244  Q
    |  | ||||||||||  ||||||| |||||||    
T  23631981 gacggtgtagttacagaaagaatagtaacaaa 23632012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 100 - 246
Target Start/End: Complemental strand, 52274747 - 52274603
Alignment:
Q  100 aagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggag 199  Q
    |||||| |||| ||||||||||||  ||||||||||||||||||||||| |||||| ||| ||||| ||||||||| |||||||||||||| ||||||      
T  52274747 aagaaattagattgtgaacggagg--gattagtaaaattgggtagaaaataggtgtagttggtgagatgagtagtgctttaatgatttaagtagagggga 52274650  T
Q  200 gtgtgaatagctaggtgatgtagttacaagaagaataataacaaaat 246  Q
    ||||||||| | |  || ||||||||||  || |||| |||||||||    
T  52274649 gtgtgaataacaaaatggtgtagttacagaaataatagtaacaaaat 52274603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 240
Target Start/End: Original strand, 18513504 - 18513616
Alignment:
Q  127 attagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggaggtgtgaatagctaggtgatgtagttac 226  Q
    |||||||||||||||||||||||||||||  |||||||| |||||||||||||||||| ||||| |||| |  ||||||||||| ||  | |||||||||    
T  18513504 attagtaaaattgggtagaaaagaggtgtaattagtgagatgagtagtgttttaatga-ttaagtagagtggagtgtgaatagcaagacggtgtagttac 18513602  T
Q  227 aagaagaataataa 240  Q
    |  || ||||||||    
T  18513603 agaaataataataa 18513616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 9131369 - 9131441
Alignment:
Q  125 ggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagaggg 197  Q
    ||||||||||||||||||||||||||| ||| ||||||||| |||| |||| |||||||||||||| ||||||    
T  9131369 ggattagtaaaattgggtagaaaagagatgtagttagtgagatgagcagtgctttaatgatttaagtagaggg 9131441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 41136552 - 41136667
Alignment:
Q  95 agaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcaga 194  Q
    |||| |||||||||||| | |||  ||||||||||||||||| ||| ||||||||| ||||  ||||| |  ||| ||||| ||||||||||||||| ||    
T  41136552 agaataagaaagtagagcgcgaaaagaggtggattagtaaaagtggatagaaaagatgtgtaattagttaaatgaatagtgctttaatgatttaagcgga 41136651  T
Q  195 gggaggtgtgaatagc 210  Q
    |||  |||||||||||    
T  41136652 ggggagtgtgaatagc 41136667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 246
Target Start/End: Original strand, 12483981 - 12484101
Alignment:
Q  127 attagtaaaattgggtagaaaa-gaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggaggtgtgaatagctaggtgatgtagtta 225  Q
    |||||||||| | ||||||||| |||||||   ||||||  || |||||||||||||||||||||  | ||||||||| |||||| || |  ||||||||    
T  12483981 attagtaaaactaggtagaaaaagaggtgtaaatagtgatatgtgtagtgttttaatgatttaagttgggggaggtgtaaatagcaagattgtgtagtta 12484080  T
Q  226 caagaagaataataacaaaat 246  Q
    ||| ||||||| |||||||||    
T  12484081 caaaaagaatagtaacaaaat 12484101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 21494118 - 21494155
Alignment:
Q  166 ctgagtagtgttttaatgatttaagcagagggaggtgt 203  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  21494118 ctgagtagtgttttaatgatttaagcagaaggaggtgt 21494155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 52274836 - 52274808
Alignment:
Q  12 gtaaggagaaagtagatgagttggttagt 40  Q
    |||||||||||||||||||||||||||||    
T  52274836 gtaaggagaaagtagatgagttggttagt 52274808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0978 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 88 - 210
Target Start/End: Complemental strand, 3211 - 3089
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgattt 187  Q
    ||||||||||| |||||||||||||||| |   |||||||||||||||||||||| |||||||||||| ||||||||| ||||||||| |||| ||||||    
T  3211 tttagagagaataagaaagtagagtgtgtatataggtggattagtaaaattgggttgaaaagaggtgtagttagtgagttgagtagtgctttattgattt 3112  T
Q  188 aagcagagggaggtgtgaatagc 210  Q
    ||||||||||||||| |||||||    
T  3111 aagcagagggaggtgcgaatagc 3089  T

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Target: scaffold0019 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 81 - 210
Target Start/End: Complemental strand, 183363 - 183234
Alignment:
Q  81 taaagtgtttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgtttta 180  Q
    |||||| ||||||||||| |||||||||||| ||||| | ||||||| ||  ||||||||||||||||||||||| |||||| |||| ||||||||||||    
T  183363 taaagtttttagagagaataagaaagtagagagtgaatgaaggtggaataacaaaattgggtagaaaagaggtgtagttagtaagcttagtagtgtttta 183264  T
Q  181 atgatttaagcagagggaggtgtgaatagc 210  Q
    ||||||||||||||| || |||||||||||    
T  183263 atgatttaagcagagagatgtgtgaatagc 183234  T

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Target: scaffold0394 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 100 - 241
Target Start/End: Original strand, 7154 - 7294
Alignment:
Q  100 aagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcagagggag 199  Q
    |||||||||||||| ||||||| |||||||||||||||||| ||| |||||||||| ||| |||| | ||||| ||||||||||||||||||||| | ||    
T  7154 aagaaagtagagtgcgaacggaagtggattagtaaaattgg-taggaaagaggtgtagtttgtgaacggagtaatgttttaatgatttaagcagatgaag 7252  T
Q  200 gtgtgaatagctaggtgatgtagttacaagaagaataataac 241  Q
    ||||||||||  || || ||||||||||| ||||| ||||||    
T  7253 gtgtgaatagtaagatggtgtagttacaacaagaacaataac 7294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 88 - 210
Target Start/End: Original strand, 171093 - 171212
Alignment:
Q  88 tttagagagaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgattt 187  Q
    |||| |||||| |||||| ||||||| |||||| |||   |||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||    
T  171093 tttaaagagaataagaaattagagtgcgaacgggggt---ttagtaaaattgggtagaaaagaggtgtagttagtgagatgagtagtgctttaatgattt 171189  T
Q  188 aagcagagggaggtgtgaatagc 210  Q
    ||| ||| ||  |||||||||||    
T  171190 aagtagatgggagtgtgaatagc 171212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 15013 - 14932
Alignment:
Q  95 agaaaaagaaagtagagtgtgaacggaggtggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgt 176  Q
    |||| ||||||||||| || |||||||| |||||||||||||||||||||||||||| ||| |||| || | ||||||||||    
T  15013 agaataagaaagtagactgagaacggagttggattagtaaaattgggtagaaaagagatgtagttaatgtgatgagtagtgt 14932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 244
Target Start/End: Original strand, 35210 - 35330
Alignment:
Q  125 ggattagtaaaattgggtagaaaagaggtgtcgttagtgagctgagtagtgttttaatgatttaagcaga-gggaggtgtgaatagctaggtgatgtagt 223  Q
    ||||||||||| |||||||||||||| |||| ||||||||| |||||| || |||||||| ||||| ||| |||| ||||||||||| ||  | ||| ||    
T  35210 ggattagtaaatttgggtagaaaagatgtgtagttagtgagatgagtaatgctttaatgagttaagtagatgggaagtgtgaatagcaagacggtgtggt 35309  T
Q  224 tacaagaagaataataacaaa 244  Q
    ||||  ||||||| |||||||    
T  35310 tacagaaagaatagtaacaaa 35330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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