View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19932_high_45 (Length: 252)
Name: NF19932_high_45
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19932_high_45 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 5612164 - 5611928
Alignment:
| Q |
15 |
aatatgtcagaaaaatgcattatcaacattttatgttttgtaaacgggctttctttgnnnnnnnnttgttttgtaaacgggcctttttatcaaacgaaaa |
114 |
Q |
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| T |
5612164 |
aatatgtcagaaaaatgcattatcaacaatttatgttttgtaaacgggctttctttgaaaaaaa-ttgttttgtaaacgggcctttttatcaaacgaaaa |
5612066 |
T |
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| Q |
115 |
attaaaaatgagtatattttttaccattcttctcatttcatgtgcaccctccaaatttattaacgtgtttgtggtgtttttgattatgcaatcctaatta |
214 |
Q |
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|||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5612065 |
attaaaaatgagaattttttttaccatccttctcatttcatgtgcaccctccaaatttattaacgtgtttgtggtgtttttgattatgcaatcctaatta |
5611966 |
T |
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| Q |
215 |
tgtaaacacttagacataaatgaacaaagagctatgtt |
252 |
Q |
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| T |
5611965 |
tgtaaacacttagacataaatgaacaaagagctatgtt |
5611928 |
T |
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