View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19932_high_54 (Length: 218)
Name: NF19932_high_54
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19932_high_54 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 139; Significance: 7e-73; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 8 - 198
Target Start/End: Complemental strand, 35766350 - 35766160
Alignment:
| Q |
8 |
agcataggccagtgacaacatggaagaaaaacgcgacgtgactctaattatcgataattctctcctagagaagaagtcctttgccgatcttggaatcata |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
35766350 |
agcagaggccagtgacaacatggaagaaaaacgcgacgtgactctaattatcgataattctctcctagtgaagaagtcctttgccgatcttggaatcgta |
35766251 |
T |
|
| Q |
108 |
cctactggatggggggatgaagaagaaaaagaacaagtaacaaagcctcctgagccaaattatgcttctcatggatgggaattgaaccaac |
198 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| | |||| ||| ||| |||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
35766250 |
cctactggatggggggacgaagaggaaaaagatgaggtaagaaaaccttctgaaccaaattatgcttctcaaggatgggaattgaaccaac |
35766160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 35760768 - 35760680
Alignment:
| Q |
107 |
acctactggatggggggatgaagaagaaaaagaacaagtaacaaagcctcctgagccaaattatgcttctcatggatgggaattgaaccaac |
198 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||| |||| || ||||||||| |||| |||||||||| |||||||| |
|
|
| T |
35760768 |
acctactggatggggggacgaagaagaaaaagaa---gtaacaaagccttctgaaccgaattatgctgctcagggatgggaatcgaaccaac |
35760680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 114 - 189
Target Start/End: Complemental strand, 35755618 - 35755543
Alignment:
| Q |
114 |
ggatggggggatgaagaagaaaaagaacaagtaacaaagcctcctgagccaaattatgcttctcatggatgggaat |
189 |
Q |
| |
|
||||||||||| ||||||||||||||| |||| | ||||||| ||||||||||||||||| ||| |||||||||| |
|
|
| T |
35755618 |
ggatggggggacgaagaagaaaaagaagaagttagaaagccttctgagccaaattatgctggtcagggatgggaat |
35755543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University