View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19932_low_1 (Length: 732)
Name: NF19932_low_1
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19932_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 639; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 17 - 720
Target Start/End: Original strand, 19118466 - 19119169
Alignment:
| Q |
17 |
agctttaagcccctggctttctcaatccatgttccaggcctatacctgtgacaatcgaacaacactcacgataaacttcattcacatttgaaactccaca |
116 |
Q |
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| T |
19118466 |
agctttaagcccctggctttctcaatccatgttccaggcctatacctgtgacaatcgaacaacactcacgataaacttcattcacatttgaaactccaca |
19118565 |
T |
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| Q |
117 |
tatgcgacatttgaaatttgattcagaatgttcatgaagtacacagcacaattccaattctattttaaagggattacaagttttcatccaatgaagcatg |
216 |
Q |
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| T |
19118566 |
tatgcgacatttgaaatttgattcagaatgttcatgaagtacacagcgcaattccatttatattttaaaaggattacaagttttcatccaatgaagcatg |
19118665 |
T |
|
| Q |
217 |
taagggtaagaatgaagaatgtggcagaagctttaaaaaatatgaggcataaaaaataacactatctagggtctgttctttgttattctgttctcaaatt |
316 |
Q |
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| T |
19118666 |
taagggtaagaaagaagaatgtggcagaagctttaaaaaatatgaggcataaaaaataacactatctagggtctgttctttgttattctgttctcaaatt |
19118765 |
T |
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| Q |
317 |
tttcctctgaaaaagaaaactgaacctcatgaaaaacctcaactttcttttcccctgtaatacttttttcatggaaataatgtagaaccaattcaccgcc |
416 |
Q |
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| T |
19118766 |
tttcctatgaaaaagaaaactgaacgtcatgaaaaacctcaactttcttttcccctgtaatacttttttcatggaaataatgtagaaccaattcaccggt |
19118865 |
T |
|
| Q |
417 |
ttgatagcacaaacaaatgtgcacatttgatcaaattgtggtttctcagcttatctgagatcaagtttcgtcagaccacgcgatacactttcagtgtttg |
516 |
Q |
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| T |
19118866 |
ttgatagcacaaacaaatgtgcacatttgatgaaattgtggtttctcagcttatctgagatcaagtttcgtcagaccacgcaatacactttcagtgtttg |
19118965 |
T |
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| Q |
517 |
aatactgaatttcaaaacaactnnnnnnnctaagatgcttttgtttattattaaaacatatatgtttaagtaaataaaaataaatgaagtctgtgctcaa |
616 |
Q |
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| T |
19118966 |
aatactgaatttcaaaacaactaaaaaaactaagatgcttttgtttattattaaaacatatatgtttaagtaaataaaaataaatgaagtctgtgctcaa |
19119065 |
T |
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| Q |
617 |
atcaatacctcaagattttttctttcgcctgtttcaaactaatgctatcaatcttcaattcatcataactttgcaggatttcttggtagatactaagtct |
716 |
Q |
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| T |
19119066 |
atcaatacctcaagattttttctttcgcctgtttcaaactaatgctatcaatcttcaattcatcataactttgcaggatttcttggtagatactaagtct |
19119165 |
T |
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| Q |
717 |
cttc |
720 |
Q |
| |
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|||| |
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| T |
19119166 |
cttc |
19119169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 565 - 720
Target Start/End: Original strand, 19111917 - 19112072
Alignment:
| Q |
565 |
tattaaaacatatatgtttaagtaaataaaaataaatgaagtctgtgctcaaatcaatacctcaagattttttctttcgcctgtttcaaactaatgctat |
664 |
Q |
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|||||| |||||||| ||||||||||||||| ||||||| | || | ||||||||||||||||||||||||||||| || | ||||||| | |||||| |
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| T |
19111917 |
tattaagacatatatagttaagtaaataaaaacaaatgaaatttgagttcaaatcaatacctcaagattttttctttggcttctttcaaattcttgctat |
19112016 |
T |
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| Q |
665 |
caatcttcaattcatcataactttgcaggatttcttggtagatactaagtctcttc |
720 |
Q |
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| T |
19112017 |
caatcttcaatgcatcataactttgcaggatttcttggtaaataccaagtcgcttc |
19112072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 239
Target Start/End: Original strand, 19111362 - 19111476
Alignment:
| Q |
123 |
acatttgaaatttgattcagaatgttcatgaagtacacagcacaattccaattctattttaaagggattacaagttttcatccaatgaagcatgtaaggg |
222 |
Q |
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||||||||||||||||| | ||| |||||| |||| | ||||||| ||||| || |||| ||||||| ||||||||||||||||||| |||||| |
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| T |
19111362 |
acatttgaaatttgattta--atgaacatgaactacataacacaatttcaattacatactaaaatgattacatattttcatccaatgaagcatttaaggg |
19111459 |
T |
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| Q |
223 |
taagaatgaagaatgtg |
239 |
Q |
| |
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| | || |||||||||| |
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| T |
19111460 |
tgataaagaagaatgtg |
19111476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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