View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19932_low_10 (Length: 471)
Name: NF19932_low_10
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19932_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 55971252 - 55970801
Alignment:
| Q |
1 |
taattgtgcagaccaaaaataaatgtaaactttaaagagagattgagttatgtgattaattaa-ttactctaacggcacagtcatgaaaatgcaagcgga |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
55971252 |
taattgtgcagaccaaaaataaatgtaaactttaaagagagattgagttatgtgattaattaaattactctaacggcacagtcatgaaaatgcaagcgga |
55971153 |
T |
|
| Q |
100 |
tgatggatggtgccaaggtggggtccttcttaacccaagcaaaaactttttgtgagataatgccttcagcatctggacatgttgaatgatagtgaccaat |
199 |
Q |
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| T |
55971152 |
tgatggatggtgccaaggtggggtccttcttaacccaagcaaaaactttttgtgagataatgccttcagcatctggacatgttgaatgatagtgaccaat |
55971053 |
T |
|
| Q |
200 |
ggaaagcaaggcttcaggaggtggtaataagggcttcaatgattttttaggcacgagaccatagacattggtgcttagctctaagatgatcacaagaagg |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55971052 |
ggaaagcaaggcttcaggaggtggtaataagggcttcaatgatcttttaggcatgagaccatagacattggtgcttagctctaagatgatcacaagaagg |
55970953 |
T |
|
| Q |
300 |
aacaatgataggtagtggaacttcatgttatttctttagctagcaatgtttggttgtgtaattggtatatgattgatgatgcattgtgagaatgtcatgc |
399 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55970952 |
aacaatgataggtagtggaacttcatgttgtttctttagctagcaatgtttggttgtgtaattggtatatgattgatgatgcattgtgagaatgtcatgc |
55970853 |
T |
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| Q |
400 |
acgtattatttaaggtaaagatttgatgataaaacgtggtatgcactactaacat |
454 |
Q |
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| T |
55970852 |
acg---tatttaaggtaaagatttgatgataaaacgtggtatgcactactaacat |
55970801 |
T |
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