View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19932_low_13 (Length: 450)

Name: NF19932_low_13
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19932_low_13
NF19932_low_13
[»] scaffold0042 (2 HSPs)
scaffold0042 (10-444)||(6488-6922)
scaffold0042 (10-442)||(13900-14332)
[»] scaffold0627 (2 HSPs)
scaffold0627 (184-444)||(1950-2210)
scaffold0627 (10-125)||(3404-3519)
[»] chr8 (5 HSPs)
chr8 (16-213)||(29821051-29821250)
chr8 (74-159)||(7094804-7094889)
chr8 (26-123)||(7098495-7098593)
chr8 (209-249)||(7094849-7094889)
chr8 (209-250)||(29821105-29821146)
[»] chr7 (9 HSPs)
chr7 (16-213)||(19633525-19633724)
chr7 (16-127)||(1609436-1609548)
chr7 (22-123)||(48189450-48189552)
chr7 (16-124)||(2186505-2186614)
chr7 (103-158)||(28386638-28386693)
chr7 (22-123)||(21270581-21270683)
chr7 (355-440)||(26262046-26262131)
chr7 (209-248)||(28386638-28386677)
chr7 (209-250)||(19633629-19633670)
[»] chr5 (4 HSPs)
chr5 (19-213)||(37628000-37628195)
chr5 (16-213)||(37807126-37807325)
chr5 (209-250)||(37628100-37628141)
chr5 (209-250)||(37807230-37807271)
[»] chr1 (4 HSPs)
chr1 (16-214)||(33885370-33885570)
chr1 (16-214)||(33958682-33958882)
chr1 (16-123)||(41314891-41314999)
chr1 (26-125)||(22362167-22362267)
[»] chr3 (4 HSPs)
chr3 (74-159)||(8376912-8376997)
chr3 (16-123)||(11035968-11036075)
chr3 (209-249)||(8376912-8376952)
chr3 (103-158)||(16473951-16474007)
[»] chr2 (1 HSPs)
chr2 (16-123)||(19214855-19214963)
[»] chr4 (3 HSPs)
chr4 (102-158)||(15424768-15424823)
chr4 (209-248)||(15424768-15424807)
chr4 (103-158)||(49496855-49496911)
[»] scaffold0657 (1 HSPs)
scaffold0657 (103-158)||(5536-5592)
[»] chr6 (2 HSPs)
chr6 (103-158)||(25003817-25003873)
chr6 (103-158)||(34635181-34635237)


Alignment Details
Target: scaffold0042 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 10 - 444
Target Start/End: Original strand, 6488 - 6922
Alignment:
Q  10 aagaatatacaaaataatattatcaatcaataaatcagaaagtcaactattttaatgtcaagtcaagataaaataatttagaataaaaatcagataaaat 109  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6488 aagaaaatacaaaataatattatcaatcaataaatcagaaagtcaactattttaatgtcaagtcaagataaaataatttagaataaaaattagataaaat 6587  T
Q  110 atcgggatcttacattctacccacctaaaatattttcgtcctcgaaactgttaagaaacgtagatttcccgaatataaatgagacaaattacccgtatgt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6588 atcgggatcttacattctacccacctaaaatattttcgtcctcaaaactgttaagaaacgtagatttcccgaatataaatgagacaaattacccggatgt 6687  T
Q  210 tacattctacccatctaaaatagtttcgccctcgaaactgatactgaagataaattctagatattgctatctcttggaatcgacttgactcatcagctat 309  Q
    ||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6688 tacattctatccacctaaaatagtttcgccctcaaaactgatactgaagataaattctagatattgctatctcttggaatcgacttgacttatcagctat 6787  T
Q  310 gagatcaagatttacgcatttatgcttaaagagcacaatgttttaataatgaaacatactaacaaggttcgagtggtgtatagaaacacacaacatctct 409  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||     
T  6788 gagatcaagatttacgcatttatgcttaaagagcgcaatgtttcaataatgaaacatactaacaaggttcgagtggtgtatagaaacaaaaaacatctca 6887  T
Q  410 tgaagactttagaggacatgaccaacactaaaagg 444  Q
    |||||||||  ||||||||||||| ||||||||||    
T  6888 tgaagacttccgaggacatgaccagcactaaaagg 6922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 10 - 442
Target Start/End: Original strand, 13900 - 14332
Alignment:
Q  10 aagaatatacaaaataatattatcaatcaataaatcagaaagtcaactattttaatgtcaagtcaagataaaataatttagaataaaaatcagataaaat 109  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  13900 aagaaaatacaaaataatattatcaatcaataaatcagaaagtcaactattttaatgtcaagtcaagataaaataatttagaataaaaataagaaaaaat 13999  T
Q  110 atcgggatcttacattctacccacctaaaatattttcgtcctcgaaactgttaagaaacgtagatttcccgaatataaatgagacaaattacccgtatgt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14000 atcgggatcttacattctacccacctaaaatattttcgtcctcaaaactgttaagaaacgtagatttcccgaatataaatgagacaaattacccggatgt 14099  T
Q  210 tacattctacccatctaaaatagtttcgccctcgaaactgatactgaagataaattctagatattgctatctcttggaatcgacttgactcatcagctat 309  Q
    ||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  14100 tacattctatccacctaaaatagtttcgccctcaaaactgatactgaagataaattctagatattgctatctcttggaatcaacttgacttatcagctat 14199  T
Q  310 gagatcaagatttacgcatttatgcttaaagagcacaatgttttaataatgaaacatactaacaaggttcgagtggtgtatagaaacacacaacatctct 409  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||     
T  14200 gagatcaagatttacgcatttatgcttaaagagcgcaatgtttcaataatgaaacatactaacaaggttcgagtggtgtatagaaacaaaaaacatctca 14299  T
Q  410 tgaagactttagaggacatgaccaacactaaaa 442  Q
    |||||||||  ||||||||||||| ||||||||    
T  14300 tgaagacttccgaggacatgaccagcactaaaa 14332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 184 - 444
Target Start/End: Original strand, 1950 - 2210
Alignment:
Q  184 ataaatgagacaaattacccgtatgttacattctacccatctaaaatagtttcgccctcgaaactgatactgaagataaattctagatattgctatctct 283  Q
    ||||||||||||||||||||| ||||||||||||| ||| |||| |||||||| |||||||| |||||| |||||||||||||||||||||||||||||     
T  1950 ataaatgagacaaattacccggatgttacattctatccacctaagatagtttctccctcgaagctgatattgaagataaattctagatattgctatctca 2049  T
Q  284 tggaatcgacttgactcatcagctatgagatcaagatttacgcatttatgcttaaagagcacaatgttttaataatgaaacatactaacaaggttcgagt 383  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2050 tggaatcgacttgacttatcagctatgaaatcaagatttacgcatttatgcttaaagagcacaatgtttcaataatgaaacatactaacaaggttcgagt 2149  T
Q  384 ggtgtatagaaacacacaacatctcttgaagactttagaggacatgaccaacactaaaagg 444  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  2150 ggtgtatagaaacacaaaacatctcttgaagacttcagaggacatgaccaacactaaaagg 2210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 3404 - 3519
Alignment:
Q  10 aagaatatacaaaataatattatcaatcaataaatcagaaagtcaactattttaatgtcaagtcaagataaaataatttagaataaaaatcagataaaat 109  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3404 aagaaaatacaaaataatattataaatcaataaatcagaaagtcaactattttaatgtcaagttaagataaaataatttagaataaaaatcagataaaat 3503  T
Q  110 atcgggatcttacatt 125  Q
    | | ||||||||||||    
T  3504 accaggatcttacatt 3519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 29821250 - 29821051
Alignment:
Q  16 atacaaaataatattatcaatcaataaatcagaaag-tcaactattttaatgtcaagtcaagataaaataatttagaataaaaatcagataaaatatcgg 114  Q
    ||||||||||||||||||| ||||||||||| |||| | || ||||||||  ||||   |||||||||||||||| |||||||||  |||||||||||||    
T  29821250 atacaaaataatattatcactcaataaatcacaaaggtaaattattttaaaatcaaagtaagataaaataatttaaaataaaaatatgataaaatatcgg 29821151  T
Q  115 gatcttacattctacccacctaaaatattttcgtcctcgaaactg-ttaagaaacgtagatttcccgaatataaatgagacaaattacccgtatgttaca 213  Q
    |||||||||||||||| |||||||||| |||||||||||||||||  ||||||| ||||||||||| |||| |||||||||||||| | || ||||||||    
T  29821150 gatcttacattctacctacctaaaatagtttcgtcctcgaaactgactaagaaaagtagatttccctaataaaaatgagacaaattcctcggatgttaca 29821051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 74 - 159
Target Start/End: Original strand, 7094804 - 7094889
Alignment:
Q  74 aagataaaataatttagaataaaaatcagataaaatatcgggatcttacattctacccacctaaaatattttcgtcctcgaaactg 159  Q
    ||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  7094804 aagataaaataatttagaataaaaatatgataaaataccgggatcttacattctacccacctaaaatagtttcgtcctcgaaactg 7094889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 123
Target Start/End: Original strand, 7098495 - 7098593
Alignment:
Q  26 atattatcaatcaataaatcagaaag-tcaactattttaatgtcaagtcaagataaaataatttagaataaaaatcagataaaatatcgggatcttaca 123  Q
    ||||||||| ||||||||||| |||| | || |||||||| ||||| | |||||||||||||||| |||||||||  ||||||||| ||||||||||||    
T  7098495 atattatcactcaataaatcacaaaggtaaattattttaaagtcaaattaagataaaataatttaaaataaaaatatgataaaataccgggatcttaca 7098593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 7094849 - 7094889
Alignment:
Q  209 ttacattctacccatctaaaatagtttcgccctcgaaactg 249  Q
    |||||||||||||| |||||||||||||| |||||||||||    
T  7094849 ttacattctacccacctaaaatagtttcgtcctcgaaactg 7094889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 29821146 - 29821105
Alignment:
Q  209 ttacattctacccatctaaaatagtttcgccctcgaaactga 250  Q
    |||||||||||| | |||||||||||||| ||||||||||||    
T  29821146 ttacattctacctacctaaaatagtttcgtcctcgaaactga 29821105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 7e-47; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 19633525 - 19633724
Alignment:
Q  16 atacaaaataatattatcaatcaataaatcagaaag-tcaactattttaatgtcaagtcaagataaaataatttagaataaaaatcagataaaatatcgg 114  Q
    ||||||||||||||||||| ||||||||| | |||| | || |||||||| ||||| | ||||||||||||||||||||||||||  ||||||||| |||    
T  19633525 atacaaaataatattatcactcaataaattacaaaggtaaattattttaaagtcaaattaagataaaataatttagaataaaaatatgataaaataccgg 19633624  T
Q  115 gatcttacattctacccacctaaaatattttcgtcctcgaaactg-ttaagaaacgtagatttcccgaatataaatgagacaaattacccgtatgttaca 213  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||  |||| || ||||||||||| |||| |  |||| ||||||||||| ||||||||    
T  19633625 gatcttacattctacccacctaaaatagtttcgtcctcaaaactgactaagcaaagtagatttccctaataaatttgaggcaaattacccggatgttaca 19633724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 1609436 - 1609548
Alignment:
Q  16 atacaaaataatattatcaatcaataaatcagaaag-tcaactattttaatgtcaagtcaagataaaataatttagaataaaaatcagataaaatatcgg 114  Q
    ||||||||||| ||||||| ||||||||||| |||| | || |||||||| ||||| | ||||||||||||||||||||||||||  ||||||||| |||    
T  1609436 atacaaaataaaattatcattcaataaatcacaaaggtaaattattttaaagtcaaattaagataaaataatttagaataaaaatatgataaaataccgg 1609535  T
Q  115 gatcttacattct 127  Q
    |||||||||||||    
T  1609536 gatcttacattct 1609548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 48189450 - 48189552
Alignment:
Q  22 aataatattatcaatcaataaatcagaaag-tcaactattttaatgtcaagtcaagataaaataatttagaataaaaatcagataaaatatcgggatctt 120  Q
    ||||||||||||| ||||||||||| |||| | || |||||||| ||||| | ||||||||||||| ||||||||||||  ||||||||| |||||||||    
T  48189450 aataatattatcactcaataaatcacaaaggtaaattattttaaagtcaaattaagataaaataatctagaataaaaatatgataaaataccgggatctt 48189549  T
Q  121 aca 123  Q
    |||    
T  48189550 aca 48189552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 2186614 - 2186505
Alignment:
Q  16 atacaaaataatattatcaatcaataaatcagaaag-tcaactattttaatgtcaagtcaagataaaataatttagaataaaaatcagataaaatatcgg 114  Q
    ||||||||||||||||||| | ||||||||| |||| | || |||||||| ||||| | ||||||||||||||||||||||||||  ||||||||| |      
T  2186614 atacaaaataatattatcacttaataaatcacaaagataaattattttaaagtcaaattaagataaaataatttagaataaaaatatgataaaataccat 2186515  T
Q  115 gatcttacat 124  Q
    ||||||||||    
T  2186514 gatcttacat 2186505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 103 - 158
Target Start/End: Complemental strand, 28386693 - 28386638
Alignment:
Q  103 ataaaatatcgggatcttacattctacccacctaaaatattttcgtcctcgaaact 158  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  28386693 ataaaatatcggaatcttacattctacccacctaaaatagtttcgtcctcgaaact 28386638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 21270581 - 21270683
Alignment:
Q  22 aataatattatcaatcaataaatcagaaag-tcaactattttaatgtcaagtcaagataaaataatttagaataaaaatcagataaaatatcgggatctt 120  Q
    ||||||||||||| ||||||||| | |||| | || |||||||| ||||| | ||||||||||||| ||||||||||||  ||||||||| |||||||||    
T  21270581 aataatattatcattcaataaattacaaaggtaaattattttaaagtcaacttaagataaaataatctagaataaaaatatgataaaataccgggatctt 21270680  T
Q  121 aca 123  Q
    |||    
T  21270681 aca 21270683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 440
Target Start/End: Original strand, 26262046 - 26262131
Alignment:
Q  355 ataatgaaacatactaacaaggttcgagtggtgtatagaaacacacaacatctcttgaagactttagaggacatgaccaacactaa 440  Q
    |||| ||||||| | ||||||||||||||| | || | ||| ||||| |||||||||||| |||| ||||||||||||| ||||||    
T  26262046 ataaggaaacattcaaacaaggttcgagtgttctacaaaaatacacaccatctcttgaaggctttggaggacatgaccagcactaa 26262131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 248
Target Start/End: Complemental strand, 28386677 - 28386638
Alignment:
Q  209 ttacattctacccatctaaaatagtttcgccctcgaaact 248  Q
    |||||||||||||| |||||||||||||| ||||||||||    
T  28386677 ttacattctacccacctaaaatagtttcgtcctcgaaact 28386638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 19633629 - 19633670
Alignment:
Q  209 ttacattctacccatctaaaatagtttcgccctcgaaactga 250  Q
    |||||||||||||| |||||||||||||| |||| |||||||    
T  19633629 ttacattctacccacctaaaatagtttcgtcctcaaaactga 19633670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 7e-47; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 37628000 - 37628195
Alignment:
Q  19 caaaataatattatcaatcaataaatcagaaagtcaactattttaatgtcaagtcaagataaaataatttagaataaaaatcagataaaatatcgggatc 118  Q
    |||||||||||||||| ||||||||||| ||||  || |||||||| ||||| | ||||||||||||||||||||||||||  ||||||||||||  |||    
T  37628000 caaaataatattatcactcaataaatcacaaaggtaattattttaaagtcaaattaagataaaataatttagaataaaaatatgataaaatatcgaaatc 37628099  T
Q  119 ttacattctacccacctaaaatattttcgtcctcgaaactg-ttaagaaacgtagatttcccgaatataaatgagacaaattacccgtatgttaca 213  Q
    ||||||||||||||||||||||| |||||||||| ||||||  |||| || ||||||||||| |||| |  |||| ||||||||||| ||||||||    
T  37628100 ttacattctacccacctaaaatagtttcgtcctcaaaactgactaagcaaagtagatttccctaataaatttgaggcaaattacccggatgttaca 37628195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 37807126 - 37807325
Alignment:
Q  16 atacaaaataatattatcaatcaataaatcagaaag-tcaactattttaatgtcaagtcaagataaaataatttagaataaaaatcagataaaatatcgg 114  Q
    ||||||||||||||||||| ||||||||||| |||| | || |||||||| ||||| | ||||||||||||||||||||||||||  ||||||||| |||    
T  37807126 atacaaaataatattatcactcaataaatcataaaggtaaattattttaaagtcaaattaagataaaataatttagaataaaaatatgataaaataccgg 37807225  T
Q  115 gatcttacattctacccacctaaaatattttcgtcctcgaaactg-ttaagaaacgtagatttcccgaatataaatgagacaaattacccgtatgttaca 213  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||  |||  || |||||||| || |||| |  |||| ||||||||||| ||||||||    
T  37807226 gatcttacattctacccacctaaaatagtttcgtcctcaaaactgactaaacaaagtagattttcctaataaatttgaggcaaattacccggatgttaca 37807325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 37628100 - 37628141
Alignment:
Q  209 ttacattctacccatctaaaatagtttcgccctcgaaactga 250  Q
    |||||||||||||| |||||||||||||| |||| |||||||    
T  37628100 ttacattctacccacctaaaatagtttcgtcctcaaaactga 37628141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 37807230 - 37807271
Alignment:
Q  209 ttacattctacccatctaaaatagtttcgccctcgaaactga 250  Q
    |||||||||||||| |||||||||||||| |||| |||||||    
T  37807230 ttacattctacccacctaaaatagtttcgtcctcaaaactga 37807271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 9e-34; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 33885570 - 33885370
Alignment:
Q  16 atacaaaataatattatcaatcaataaatcagaaag-tcaactattttaatgtcaag-tcaagataaaataatttagaataaaaatcagataaaatatcg 113  Q
    ||||| ||||||||||||| ||||||||||| |||| | || |||||||| |||||  | |||||||||||||||| |||||||||  ||||||||| |     
T  33885570 atacagaataatattatcactcaataaatcacaaaggtaaattattttaaagtcaaaattaagataaaataatttaaaataaaaatatgataaaata-ct 33885472  T
Q  114 ggatcttacattctacccacctaaaatattttcgtcctcgaaactg-ttaagaaacgtagatttcccgaatataaatgagacaaattacccgtatgttac 212  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||  |||  || ||||||||||| |||| | ||||| ||||||||||  |||||||    
T  33885471 ggatcttacattctacccacctaaaataatttcgtcctcaaaactgactaaacaaagtagatttccctaataaatatgaggcaaattacccagatgttac 33885372  T
Q  213 at 214  Q
    ||    
T  33885371 at 33885370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 33958682 - 33958882
Alignment:
Q  16 atacaaaataatattatcaatcaataaatcagaaag-tcaactattttaatgtcaag-tcaagataaaataatttagaataaaaatcagataaaatatcg 113  Q
    ||||| ||||||||||||| ||||||||||| |||| | || |||||||| |||||  | |||||||||||||||| |||||||||  ||||||||| |     
T  33958682 atacagaataatattatcactcaataaatcacaaaggtaaattattttaaagtcaaaattaagataaaataatttaaaataaaaatatgataaaata-ct 33958780  T
Q  114 ggatcttacattctacccacctaaaatattttcgtcctcgaaactg-ttaagaaacgtagatttcccgaatataaatgagacaaattacccgtatgttac 212  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||  |||  || ||||||||||| |||| | ||||| ||||||||||  |||||||    
T  33958781 ggatcttacattctacccacctaaaataatttcgtcctcaaaactgactaaacaaagtagatttccctaataaatatgaggcaaattacccagatgttac 33958880  T
Q  213 at 214  Q
    ||    
T  33958881 at 33958882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 41314891 - 41314999
Alignment:
Q  16 atacaaaataatattatcaatcaataaatcagaaag-tcaactattttaatgtcaagtcaagataaaataatttagaataaaaatcagataaaatatcgg 114  Q
    ||||||||||||||||||| ||||||||||| |||| | || |||||||| ||||| | ||||||||||||||||||||||||||  ||||||||| |||    
T  41314891 atacaaaataatattatcactcaataaatcacaaaggtaaattattttaaagtcaaattaagataaaataatttagaataaaaatatgataaaataccgg 41314990  T
Q  115 gatcttaca 123  Q
    |||||||||    
T  41314991 gatcttaca 41314999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 26 - 125
Target Start/End: Complemental strand, 22362267 - 22362167
Alignment:
Q  26 atattatcaatcaataaatcagaaag-tcaactattttaatgtcaagtcaagataaaataatttagaataaaaatcagataaaatatcgggatcttacat 124  Q
    ||||||||| ||||||||||| |||| | || |||||||| ||||| | ||||||||||||||||||||||||||  ||||||||| || ||||||||||    
T  22362267 atattatcactcaataaatcacaaaggtaaattattttaaagtcaaattaagataaaataatttagaataaaaatatgataaaataccgcgatcttacat 22362168  T
Q  125 t 125  Q
    |    
T  22362167 t 22362167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 74 - 159
Target Start/End: Complemental strand, 8376997 - 8376912
Alignment:
Q  74 aagataaaataatttagaataaaaatcagataaaatatcgggatcttacattctacccacctaaaatattttcgtcctcgaaactg 159  Q
    ||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  8376997 aagataaaataatttagaataaaaatatgataaaataccgggatcttacattctacccacctaaaatagtttcgtcctcgaaactg 8376912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 11035968 - 11036075
Alignment:
Q  16 atacaaaataatattatcaatcaataaatcagaaagtcaactattttaatgtcaagtcaagataaaataatttagaataaaaatcagataaaatatcggg 115  Q
    ||||||||||||||||||| ||||||||||| || || || |||||||||||||| | ||||||| ||||||||||||||||||  |||||||||| |||    
T  11035968 atacaaaataatattatcactcaataaatcacaaggtaaattattttaatgtcaaattaagataacataatttagaataaaaatatgataaaatattggg 11036067  T
Q  116 atcttaca 123  Q
     |||||||    
T  11036068 ttcttaca 11036075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 8376952 - 8376912
Alignment:
Q  209 ttacattctacccatctaaaatagtttcgccctcgaaactg 249  Q
    |||||||||||||| |||||||||||||| |||||||||||    
T  8376952 ttacattctacccacctaaaatagtttcgtcctcgaaactg 8376912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 158
Target Start/End: Complemental strand, 16474007 - 16473951
Alignment:
Q  103 ataaaatatcgggatcttacattc-tacccacctaaaatattttcgtcctcgaaact 158  Q
    ||||||||||||||| |||||||| ||||| | ||||||| ||||||||||||||||    
T  16474007 ataaaatatcgggatgttacattcttacccccttaaaatagtttcgtcctcgaaact 16473951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 19214963 - 19214855
Alignment:
Q  16 atacaaaataatattatcaatcaataaatcagaaag-tcaactattttaatgtcaagtcaagataaaataatttagaataaaaatcagataaaatatcgg 114  Q
    ||||||||||||||||||| ||||||||||| |||| | || ||||||||  ||||   ||||||||||||||||||||||||||  |||||||||||||    
T  19214963 atacaaaataatattatcattcaataaatcaaaaaggtaaattattttaaaatcaaagtaagataaaataatttagaataaaaatatgataaaatatcgg 19214864  T
Q  115 gatcttaca 123  Q
    |||||||||    
T  19214863 gatcttaca 19214855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 15424823 - 15424768
Alignment:
Q  102 gataaaatatcgggatcttacattctacccacctaaaatattttcgtcctcgaaact 158  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  15424823 gataaaata-cgggatcttacattctacccacctaaaatagtttcgtcctcgaaact 15424768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 248
Target Start/End: Complemental strand, 15424807 - 15424768
Alignment:
Q  209 ttacattctacccatctaaaatagtttcgccctcgaaact 248  Q
    |||||||||||||| |||||||||||||| ||||||||||    
T  15424807 ttacattctacccacctaaaatagtttcgtcctcgaaact 15424768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 158
Target Start/End: Complemental strand, 49496911 - 49496855
Alignment:
Q  103 ataaaatatcgggatcttacattct-acccacctaaaatattttcgtcctcgaaact 158  Q
    ||||||||||||||| ||||||| | |||| | ||||||| ||||||||||||||||    
T  49496911 ataaaatatcgggatgttacattattacccccttaaaatagtttcgtcctcgaaact 49496855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0657 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 158
Target Start/End: Original strand, 5536 - 5592
Alignment:
Q  103 ataaaatatcgggatcttacattc-tacccacctaaaatattttcgtcctcgaaact 158  Q
    ||||||||||||||| |||||||| ||||| | ||||||| ||||||||||||||||    
T  5536 ataaaatatcgggatgttacattcttacccccttaaaatagtttcgtcctcgaaact 5592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 158
Target Start/End: Complemental strand, 25003873 - 25003817
Alignment:
Q  103 ataaaatatcgggatcttacattc-tacccacctaaaatattttcgtcctcgaaact 158  Q
    ||||||||||||||| |||||||| ||||| | ||||||| ||||||||||||||||    
T  25003873 ataaaatatcgggatgttacattcttacccccttaaaatagtttcgtcctcgaaact 25003817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 158
Target Start/End: Complemental strand, 34635237 - 34635181
Alignment:
Q  103 ataaaatatcgggatcttacattc-tacccacctaaaatattttcgtcctcgaaact 158  Q
    ||||||||||||||| |||||||| ||||| | ||||||| ||||||||||||||||    
T  34635237 ataaaatatcgggatgttacattcttacccccttaaaatagtttcgtcctcgaaact 34635181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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