View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19932_low_14 (Length: 440)
Name: NF19932_low_14
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19932_low_14 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 7 - 424
Target Start/End: Complemental strand, 56393822 - 56393402
Alignment:
| Q |
7 |
aacaaaggctacaccaaaagaccagaaatctgaggaatatgaaacatgggaagatgaaaactgcttggtcaagtcttggcttctggattctattaccaaa |
106 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
56393822 |
aacaaaggctacaccaatagaccagaaatctgaggaatatgaaacatgggaagatgaaaactgcttggtcaagtcttggcttctggattctatgaccaaa |
56393723 |
T |
|
| Q |
107 |
gaaaccagatccctcttcattcgcttggctatggcaaaggaaatttgggaaaccgtgaaggagacgtattcggtaaaccaagatgcatcaagagcatatc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56393722 |
gaaaccagatccctcttcattcgcttggctacgacaaaggaaatttgggaaactgtgaaggagacgtattcggtaaaccaagatgcatcaagagcatatc |
56393623 |
T |
|
| Q |
207 |
aattgtatcgtgaggtaatctctactcaacaaaatggtggatctgttattacttactttagtaaattgcagaggttatggcaagagtatgattctattaa |
306 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
56393622 |
aattgtatcgtg-ggtaatctctactcaacaaaatggtggatctgttattacttactttagtaaattgcagaggttatggcaagagtatgatgctattaa |
56393524 |
T |
|
| Q |
307 |
tgattgtaccatggaatgccctaaagatgtt-gagaagtataacaagatggttaattcccaacgagttta---nnnnnnngtcgggctggattcacattt |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
56393523 |
tgattgtaccatggaatgccctaaagatgttagagaagtataacaagatggttaattcccaacgagtttatgtttttttggctgggctggattcacattt |
56393424 |
T |
|
| Q |
403 |
ggatggagtttgtggtcgtatc |
424 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
56393423 |
ggatggagttcgtggtcgtatc |
56393402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 7 - 424
Target Start/End: Complemental strand, 27518060 - 27517640
Alignment:
| Q |
7 |
aacaaaggctacaccaaaagaccagaaatctgaggaatatgaaacatgggaagatgaaaactgcttggtcaagtcttggcttctggattctattaccaaa |
106 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27518060 |
aacaaaggctacaccaaaagactaaaaatctgaggagtatgaaacatgggaagatgaaaactgcttggtcaagtcttggcttctggattctatgaccaaa |
27517961 |
T |
|
| Q |
107 |
gaaaccagatccctcttcattcgcttggctatggcaaaggaaatttgggaaaccgtgaaggagacgtattcggtaaaccaagatgcatcaagagcatatc |
206 |
Q |
| |
|
||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
27517960 |
gaaactagatccctcttcattcgcttggctacgacaaaggaaatttgggaaaccgtgaaggagacgtattcagtaaaccaagatgcatcaagagcatatc |
27517861 |
T |
|
| Q |
207 |
aattgtatcgtgaggtaatctctactcaacaaaatggtggatctgttattacttactttagtaaattgcagaggttatggcaagagtatgattctattaa |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27517860 |
aattgtatcgtgaggtaatctctactcaacaaaatggtggatctgttattacttactttagtaaattgcagaggttatggcaagagtatgatgctattaa |
27517761 |
T |
|
| Q |
307 |
tgattgtaccatggaatgccctaaagatgttgagaagtataacaagatggttaattcccaacgagttta---nnnnnnngtcgggctggattcacatttg |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||||||||||| |
|
|
| T |
27517760 |
tgattgtaccatggaatgccctaaagatgttgagaagtataacaagatggctaattcacaacgagtttatgtttttttggctgggctggattcacatttg |
27517661 |
T |
|
| Q |
404 |
gatggagtttgtggtcgtatc |
424 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
27517660 |
gatggagttcgtggtcgtatc |
27517640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 8192193 - 8192134
Alignment:
| Q |
35 |
tctgaggaatatgaaacatgggaagatgaaaactgcttggtcaagtcttggcttctggat |
94 |
Q |
| |
|
||||| ||||||||||| ||||||||||| || || |||||||||||||||||||||||| |
|
|
| T |
8192193 |
tctgatgaatatgaaacttgggaagatgagaattgtttggtcaagtcttggcttctggat |
8192134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 263
Target Start/End: Complemental strand, 8192043 - 8191965
Alignment:
| Q |
185 |
caagatgcatcaagagcatatcaattgtatcgtgaggtaatctctactcaacaaaatggtggatctgttattacttact |
263 |
Q |
| |
|
||||||||||||| |||||||| | ||| |||||||||| |||| | ||||| |||||||||| ||| ||||||||| |
|
|
| T |
8192043 |
caagatgcatcaaaggcatatcagctttattgtgaggtaatatctattaaacaagatggtggatccgttgttacttact |
8191965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 7 - 375
Target Start/End: Complemental strand, 40457777 - 40457409
Alignment:
| Q |
7 |
aacaaaggctacaccaaaagaccagaaatctgaggaatatgaaacatgggaagatgaaaactgcttggtcaagtcttggcttctggattctattaccaaa |
106 |
Q |
| |
|
|||||||||| |||||||||| |||||| ||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||| || ||||| |||||| |
|
|
| T |
40457777 |
aacaaaggctgcaccaaaagatgagaaattcgaggagtatgaaacatgggaggatgaaaactgtttggttaagtcatggcttcttgactctatgaccaaa |
40457678 |
T |
|
| Q |
107 |
gaaaccagatccctcttcattcgcttggctatggcaaaggaaatttgggaaaccgtgaaggagacgtattcggtaaaccaagatgcatcaagagcatatc |
206 |
Q |
| |
|
|| | |||||| ||||| ||||| ||||||| ||| |||||||| ||||| ||| | |||||||||||||| || |||||||||||||| || ||||||| |
|
|
| T |
40457677 |
gacatcagatcactctttattcgtttggctacggcgaaggaaatatgggacaccatcaaggagacgtattcagtcaaccaagatgcatctagggcatatc |
40457578 |
T |
|
| Q |
207 |
aattgtatcgtgaggtaatctctactcaacaaaatggtggatctgttattacttactttagtaaattgcagaggttatggcaagagtatgattctattaa |
306 |
Q |
| |
|
|||| || |||||| |||| |||||||| ||||||||||| ||| | |||| || ||| | ||||| | ||||| ||||||||||||||| | ||| |
|
|
| T |
40457577 |
aattataccgtgagataatttctactcatcaaaatggtggttctatgattatatattttggaaaattaaaaaggttgtggcaagagtatgatgccattgc |
40457478 |
T |
|
| Q |
307 |
tgattgtaccatggaatgccctaaagatgttgagaagtataacaagatggttaattcccaacgagttta |
375 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||||| | |||||||| ||||| ||||| |
|
|
| T |
40457477 |
aaattgtaccatggagtgcactaaagatgttgagaagtataacaccactgttaattctcaacgtgttta |
40457409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 265
Target Start/End: Original strand, 40088576 - 40088806
Alignment:
| Q |
35 |
tctgaggaatatgaaacatgggaagatgaaaactgcttggtcaagtcttggcttctggattctattaccaaagaaaccagatccctcttcattcgcttgg |
134 |
Q |
| |
|
||||| ||||||||||| ||||||||||| || || |||||||||||||||||||||||| | || || ||||| || || || ||||| || || |
|
|
| T |
40088576 |
tctgatgaatatgaaacttgggaagatgagaattgtttggtcaagtcttggcttctggatgcaatgacaaaagatgttaggtcgcttttcatccggttac |
40088675 |
T |
|
| Q |
135 |
ctatggcaaaggaaatttgggaaaccgtgaaggagacgtattcggtaaaccaagatgcatcaagagcatatcaattgtatcgtgaggtaatctctactca |
234 |
Q |
| |
|
||| || ||| | || |||||| | || |||||||| || || || | ||||||||||||| |||||||| | ||| |||||||||| |||| | | |
|
|
| T |
40088676 |
ctacagccaagaagatctgggaatcggtcaaggagacttactctgtcagtcaagatgcatcaaaggcatatcagctttattgtgaggtaatatctattaa |
40088775 |
T |
|
| Q |
235 |
acaaaatggtggatctgttattacttacttt |
265 |
Q |
| |
|
|||| |||||||||| ||| ||||||||||| |
|
|
| T |
40088776 |
acaagatggtggatccgttgttacttacttt |
40088806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 265
Target Start/End: Original strand, 4242136 - 4242366
Alignment:
| Q |
35 |
tctgaggaatatgaaacatgggaagatgaaaactgcttggtcaagtcttggcttctggattctattaccaaagaaaccagatccctcttcattcgcttgg |
134 |
Q |
| |
|
||||| ||||||||||| ||||||||||| || || |||||||||||||||||||||||| | || || ||||| || || || ||||| || || |
|
|
| T |
4242136 |
tctgatgaatatgaaacttgggaagatgagaattgtttggtcaagtcttggcttctggatgcaatgacaaaagatgttaggtcgcttttcatccggttac |
4242235 |
T |
|
| Q |
135 |
ctatggcaaaggaaatttgggaaaccgtgaaggagacgtattcggtaaaccaagatgcatcaagagcatatcaattgtatcgtgaggtaatctctactca |
234 |
Q |
| |
|
||| || ||| | || |||||| | || |||||||| || || || | ||||||||||||| |||||||| | ||| |||||||||| |||| | | |
|
|
| T |
4242236 |
ctacagccaagaagatctgggaatcggtcaaggagacttactctgtcagtcaagatgcatcaaaggcatatcagctttattgtgaggtaatatctattaa |
4242335 |
T |
|
| Q |
235 |
acaaaatggtggatctgttattacttacttt |
265 |
Q |
| |
|
|||| |||||||||| ||| ||||||||||| |
|
|
| T |
4242336 |
acaagatggtggatccgttgttacttacttt |
4242366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 495880 - 495939
Alignment:
| Q |
35 |
tctgaggaatatgaaacatgggaagatgaaaactgcttggtcaagtcttggcttctggat |
94 |
Q |
| |
|
||||| ||||||||||| ||||||||||| || || |||||||||||||||||||||||| |
|
|
| T |
495880 |
tctgatgaatatgaaacttgggaagatgagaattgtttggtcaagtcttggcttctggat |
495939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 8016998 - 8017057
Alignment:
| Q |
35 |
tctgaggaatatgaaacatgggaagatgaaaactgcttggtcaagtcttggcttctggat |
94 |
Q |
| |
|
||||| ||||||||||| ||||||||||| || || |||||||||||||||||||||||| |
|
|
| T |
8016998 |
tctgatgaatatgaaacttgggaagatgagaattgtttggtcaagtcttggcttctggat |
8017057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 265
Target Start/End: Original strand, 8017148 - 8017228
Alignment:
| Q |
185 |
caagatgcatcaagagcatatcaattgtatcgtgaggtaatctctactcaacaaaatggtggatctgttattacttacttt |
265 |
Q |
| |
|
||||||||||||| |||||||| | ||| |||||||||| |||| | ||||| |||||||||| ||| ||||||||||| |
|
|
| T |
8017148 |
caagatgcatcaaaggcatatcagctttattgtgaggtaatatctattaaacaagatggtggatccgttgttacttacttt |
8017228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University