View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19932_low_16 (Length: 421)
Name: NF19932_low_16
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19932_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 15 - 405
Target Start/End: Complemental strand, 29676778 - 29676389
Alignment:
| Q |
15 |
cacagacacgtcgacactactaatgccaaaaacataagccacatacagacaccgatacataaaaaataaaccaaacattttatgattaaactactaacga |
114 |
Q |
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||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29676778 |
cacagacacgttgacactactaatgccaaaaacataaggcacatacagacaccgatacataaaaaataaaccaaatattttatgattaaactactaacga |
29676679 |
T |
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| Q |
115 |
gctcatgcgtttgcatagtcctgagaaaaatgtagcggaaaacagatttgtgaaattctgccacatgtcagtagaaattaggaaaatactatttataaga |
214 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29676678 |
gctcatgcgtttgcatagtcctgagaaaaatgt-gctgaaaacagatgtatgaaattctgctacatgtcagtagaaattaggaaaatactatttataaga |
29676580 |
T |
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| Q |
215 |
tagatagagatcaaagaggatacgcacgctgagagttcctggcctcccccgttaaatccagtactccaaaagattccagcaggtttgcctgcgagtgctt |
314 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29676579 |
tagatagggatcaaagaggatactcacgctgagagttcctggcctcccccgttaaatccagtactccaaaagattccagcaggtttgcctgcgagtgctt |
29676480 |
T |
|
| Q |
315 |
gagacgcccacaactctccagtagcgtcaaagaaggccttgagctggcttggcatcataccaaaacgtgaaggaaaaccaaatatcaaagc |
405 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29676479 |
gagacgcccacaactctccagtagcgtcaaagaatgccttgagctggctaggcatcataccaaaacgtgaaggaaaaccaaatatcaaagc |
29676389 |
T |
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