View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19932_low_17 (Length: 420)
Name: NF19932_low_17
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19932_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 4 - 306
Target Start/End: Original strand, 22579051 - 22579348
Alignment:
| Q |
4 |
aaagaaaatagggaacgtgagaaactaatagggcgagaaaagtaatagcaatgaaataattggcttgggctataacattgggcttctggactgcttagtg |
103 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
22579051 |
aaagaaaatatagcacgtgagaaactaatagggcgagaaaagtaatagcatttaaataattggctcgggctataacattggacttctggactgcttagtg |
22579150 |
T |
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| Q |
104 |
gtcaatactaacatttctatatagaattatcggaaacaaaaat---gtattaggaaaagtgagataaacttttaaaatggttgaactagaggaatnnnnn |
200 |
Q |
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| T |
22579151 |
gccaatacaaacatctccatatagaattatcggaaacaaaaatgtagtattaggaaaagtgagataaacttttaaaatggttgaactagaggaat----- |
22579245 |
T |
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| Q |
201 |
nnnnnnnnnnnnnnnnngagaccacacattaaactaaaactttttaaatttataaatcattaattttgatgaactagaggaacaaactctaaatgtatgc |
300 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
22579246 |
-aaaagaaaaagaaaaggagaccac--attagactaaaactttttaaatttataaatcattaatttggttgaactagaggaacaaactctaaatgtatgc |
22579342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 304 - 401
Target Start/End: Original strand, 22579509 - 22579609
Alignment:
| Q |
304 |
taaatctcatcaaatatataaatgtgagtattggagatatcatatcatagtgacataaaaaatgaaagtggg---ataaataagtctagttttgtttgga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||| |
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| T |
22579509 |
taaatctcatcaaatatataaatgtgagtattggagatatcatatcatagtgacataaaaaatgaaagtgagatcataaataagtgtagttttgtttgga |
22579608 |
T |
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| Q |
401 |
g |
401 |
Q |
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| T |
22579609 |
g |
22579609 |
T |
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