View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19932_low_20 (Length: 410)
Name: NF19932_low_20
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19932_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 20974860 - 20974460
Alignment:
| Q |
1 |
ttgaaggtggaatattgaaatgatgattggtgttagaattgcatttgcatttgagaaatatgacatggttacatttaataattccaatttcttaaattat |
100 |
Q |
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| T |
20974860 |
ttgaaggtggaatattgaaatgatgattggtgttagaattgcatttgcatttgagaaatatgacatggttacatttaataattccaatttcttaaattat |
20974761 |
T |
|
| Q |
101 |
tatcagtgtca--------gtatcgtgtccgtggttcaaaggcttcaaaggttaacattgattcatagataaagagagccttggagctagagttgttgta |
192 |
Q |
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| T |
20974760 |
tatcagtgtcaatgtgtcagtatcgtgtccgtgcttcaaaggcttcaaaggttaacattgattcatagataaagagatccttggagctagagttgttgta |
20974661 |
T |
|
| Q |
193 |
acttaccttcttatttttgtatgattcagacattggagttgaggaaagctgaccaaaagtttcaacacaaaaatgtcaccattatatgaagtccaaatac |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20974660 |
acttaccttcttatttttgtatgattcagacattggagttgaggaaagctgaccaaaagtttcaacacaaaaatgtcaccattatatgaagtccaaatac |
20974561 |
T |
|
| Q |
293 |
aatgatgtaatcaatgatnnnnnnnnttcaaaatctacataccatttcatcaaggttcttccacacacttgacatatcacagatagattttgagcaaaca |
392 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20974560 |
aatgatgtaatcaatgataaaaaaaattcaaattctacataccatttcatcaaggttcttccacacacttgacatatcacagatagattttgagcaaaca |
20974461 |
T |
|
| Q |
393 |
g |
393 |
Q |
| |
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| T |
20974460 |
g |
20974460 |
T |
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