View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19932_low_23 (Length: 389)
Name: NF19932_low_23
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19932_low_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 10282718 - 10283091
Alignment:
| Q |
1 |
ctcaatgggtatgattggttggtgatgttgaaaggtaattaatgggttttaagagtattatatatagtgcaaatcatatgttagttaagttagttatgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10282718 |
ctcaatgggtatgattggttggtgatgttgaaaggtaattcatgggttttaagagtattatatatagtgcaaatcatatggtagttaagttagttatgtt |
10282817 |
T |
|
| Q |
101 |
acttggtgtgcaaataacttactaagttggttttcatgtcttgggcttcactagtactttgtaagcctgactcataaaatgtataagtaatcacattatg |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10282818 |
acttggtgtgtaaataacttactaagttggttttcatgtcttgggcttcactagtactttgtaagcctgactcataaaatgtataagtaatcacattatg |
10282917 |
T |
|
| Q |
201 |
atgatgaattaaggagtaaagtgcataaccataaccattctaagaacctaccatagactaaattctaacaactcaagattaagtgtcctttcatcctttg |
300 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10282918 |
atgatgaatgaaggagtaaagtgcataaccataaccattctaagaacctaccatagactaaattctaacaactcaagattaagtatcctttcatcctttg |
10283017 |
T |
|
| Q |
301 |
atcatttagtgaagatgacaagctcttatatggagaatcttggcaatagtttcggttgaaaattaccaattttt |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10283018 |
atcatttagtgaagatgacaagctcttatatggagaatcttggcaatagtttcggttgcaaattaccaattttt |
10283091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University