View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19932_low_24 (Length: 367)
Name: NF19932_low_24
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19932_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 17 - 356
Target Start/End: Complemental strand, 24127283 - 24126945
Alignment:
| Q |
17 |
ggttgaacaattccatcatcttaaatgctcttgaatatgcattttcccttaacaatgtatgcaactagtatgaatgcgtgtgtaattttctaatttctaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24127283 |
ggttgaacaattccatcatcttaaatgctcttgaatatgcattttcccttaacaatgtgtgcaactagtatgaatgcgtgtgtaattttctaatttctaa |
24127184 |
T |
|
| Q |
117 |
taaaacttctttcatattaaagcagggctggcattgcattagcaaactctcttcctagtgtgtttagagacaccatttttcttaatcgcgttcgtgtaag |
216 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24127183 |
tcaaacttctttcatattaaagcagggctggcattgcattagcaaactctcttcctagtgtgtttagagacaccatttttcttaatcgcgttcgtgtaag |
24127084 |
T |
|
| Q |
217 |
tattacctttcacataactatatacaaatttgattcataacttgtttcatatatataggatatgatttaatgttactaagacctgtttttatccacaaca |
316 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24127083 |
tatttcctttcacataactatatacaaatttgattcataacttgtttcatatagataggatatgatttaatgttac-aagacctgtttttatccacaaca |
24126985 |
T |
|
| Q |
317 |
acaatatcttttgaaagagttgattctcatatttgatatt |
356 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||| |
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| T |
24126984 |
acaatatcttttgaaagagttgattgtcatatttgatatt |
24126945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 45160985 - 45161297
Alignment:
| Q |
18 |
gttgaacaattccatcatcttaaatgctcttgaatatgcattttcccttaacaatgtatgcaactagtatgaatgcgtgtgtaattttctaatttctaat |
117 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||||| |||| ||||| ||||||| |||||||||| |||||| ||||||||||| ||| |
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| T |
45160985 |
gttgagcaattccatcatcttaaatgctcttaaatatgcatttttt-ttaataatgtgtgcaacttgtatgaatgcatgtgtatttttctaattttcaat |
45161083 |
T |
|
| Q |
118 |
aaaacttctttcatattaaagcagggctggcattgcattagcaaactctcttcctagtgtgtttagagacaccatttttcttaatcgcgttcgtgtaagt |
217 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
45161084 |
aaaacttctttcgtattaaagcagggctggcattgcattagcaaactctcttcctagtgtgtttagagacaccatttttcttaatcaccttcgtgtaagt |
45161183 |
T |
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| Q |
218 |
attacctttcacataactatatacaaatttgattcataacttgtttcatatatataggatatgatttaatgttactaagacctgtttttatccacaacaa |
317 |
Q |
| |
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||| | |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||| | |||||| |
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| T |
45161184 |
atttcgtttcacataactatatacaaatttgattcataacttgtttgatatagataggatatgatttaatgttac-aagacctgtttttaacaccaacaa |
45161282 |
T |
|
| Q |
318 |
caatatcttttgaaa |
332 |
Q |
| |
|
||||||||||||||| |
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| T |
45161283 |
caatatcttttgaaa |
45161297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 8722631 - 8722343
Alignment:
| Q |
17 |
ggttgaacaattccatcatcttaaatgctcttgaatatgcattttcccttaacaatgtatgcaactagtatgaatgcgtgtgtaattttctaatttctaa |
116 |
Q |
| |
|
||||||||||||| |||||| ||| ||||||||| ||| ||||||||| | ||| | | ||| | ||| |||| | |||||| ||||||| |||| || |
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| T |
8722631 |
ggttgaacaattcgatcatcataagtgctcttgagtattgattttccctcgaaaattt-tacaaattgtacgaattcatgtgtatttttctagtttccaa |
8722533 |
T |
|
| Q |
117 |
taaaacttctttcatattaaagcagggctggcattgcattagcaaactctcttcctagtgtgtttagagacaccatttttcttaatcgcgttcgtgtaag |
216 |
Q |
| |
|
|||||||||||||||||||||| ||| || ||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| | ||||||||| |
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| T |
8722532 |
taaaacttctttcatattaaagtagga-tgacattgcattagcaaactctcttccttatgtgtctagagacaccattttccttaatcactttcgtgtaaa |
8722434 |
T |
|
| Q |
217 |
tattacctttcacataactatatacaaatttgattcataacttgtttcatatatataggatatgatttaatgttactaagacctgtttttatc |
309 |
Q |
| |
|
| || | ||||||| |||| ||||||| ||||||||||||||||||| || || ||| ||| ||||||||||||| ||||||||||||||| |
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|
| T |
8722433 |
tctttcatttcacacaactttatacaattttgattcataacttgtttgat-tagatatcataagatttaatgttac-gagacctgtttttatc |
8722343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 9074518 - 9074230
Alignment:
| Q |
17 |
ggttgaacaattccatcatcttaaatgctcttgaatatgcattttcccttaacaatgtatgcaactagtatgaatgcgtgtgtaattttctaatttctaa |
116 |
Q |
| |
|
||||||||||||| |||||| ||| ||||||||| ||| ||||||||| | ||| | | ||| | ||| |||| | |||||| ||||||| |||| || |
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| T |
9074518 |
ggttgaacaattcgatcatcataagtgctcttgagtattgattttccctcgaaaattt-tacaaattgtacgaattcatgtgtatttttctagtttccaa |
9074420 |
T |
|
| Q |
117 |
taaaacttctttcatattaaagcagggctggcattgcattagcaaactctcttcctagtgtgtttagagacaccatttttcttaatcgcgttcgtgtaag |
216 |
Q |
| |
|
|||||||||||||||||||||| ||| || ||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| | ||||||||| |
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| T |
9074419 |
taaaacttctttcatattaaagtagga-tgacattgcattagcaaactctcttccttatgtgtctagagacaccattttccttaatcactttcgtgtaaa |
9074321 |
T |
|
| Q |
217 |
tattacctttcacataactatatacaaatttgattcataacttgtttcatatatataggatatgatttaatgttactaagacctgtttttatc |
309 |
Q |
| |
|
| || | ||||||| |||| ||||||| ||||||||||||||||||| || || ||| ||| ||||||||||||| ||||||||||||||| |
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| T |
9074320 |
tctttcatttcacacaactttatacaattttgattcataacttgtttgat-tagatatcataagatttaatgttac-gagacctgtttttatc |
9074230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 84 - 203
Target Start/End: Complemental strand, 8716211 - 8716093
Alignment:
| Q |
84 |
gtatgaatgcgtgtgtaattttctaatttctaataaaacttctttcatattaaagcagggctggcattgcattagcaaactctcttcctagtgtgtttag |
183 |
Q |
| |
|
|||||||| | |||||| ||||||| ||| |||||||||||||||||||||||| ||| || ||||||| ||||||||||||||||| |||||| ||| |
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| T |
8716211 |
gtatgaattcatgtgtatttttctagtttacaataaaacttctttcatattaaagtagga-tgacattgcagtagcaaactctcttccttgtgtgtctag |
8716113 |
T |
|
| Q |
184 |
agacaccatttttcttaatc |
203 |
Q |
| |
|
|||||||||||| ||||||| |
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|
| T |
8716112 |
agacaccattttccttaatc |
8716093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 84 - 203
Target Start/End: Complemental strand, 9068098 - 9067980
Alignment:
| Q |
84 |
gtatgaatgcgtgtgtaattttctaatttctaataaaacttctttcatattaaagcagggctggcattgcattagcaaactctcttcctagtgtgtttag |
183 |
Q |
| |
|
|||||||| | |||||| ||||||| ||| |||||||||||||||||||||||| ||| || ||||||| ||||||||||||||||| |||||| ||| |
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| T |
9068098 |
gtatgaattcatgtgtatttttctagtttacaataaaacttctttcatattaaagtagga-tgacattgcagtagcaaactctcttccttgtgtgtctag |
9068000 |
T |
|
| Q |
184 |
agacaccatttttcttaatc |
203 |
Q |
| |
|
|||||||||||| ||||||| |
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|
| T |
9067999 |
agacaccattttccttaatc |
9067980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 329
Target Start/End: Complemental strand, 8716053 - 8715948
Alignment:
| Q |
222 |
cctttcacataactatatacaaatttgattcataacttgtttcatatatataggatatgatttaatgttactaagacctgtttttatccacaacaacaat |
321 |
Q |
| |
|
||||||||| || | ||||||| ||||||||||||||||||| || || ||| ||| |||||||||||| |||||||| ||||||| || ||||||| |
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| T |
8716053 |
cctttcacacaattttatacaattttgattcataacttgtttgat-tagatatcataatatttaatgttac-aagacctgattttatcagcagcaacaat |
8715956 |
T |
|
| Q |
322 |
atcttttg |
329 |
Q |
| |
|
|||||||| |
|
|
| T |
8715955 |
atcttttg |
8715948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 329
Target Start/End: Complemental strand, 9067940 - 9067835
Alignment:
| Q |
222 |
cctttcacataactatatacaaatttgattcataacttgtttcatatatataggatatgatttaatgttactaagacctgtttttatccacaacaacaat |
321 |
Q |
| |
|
||||||||| || | ||||||| ||||||||||||||||||| || || ||| ||| |||||||||||| |||||||| ||||||| || ||||||| |
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| T |
9067940 |
cctttcacacaattttatacaattttgattcataacttgtttgat-tagatatcataatatttaatgttac-aagacctgattttatcagcagcaacaat |
9067843 |
T |
|
| Q |
322 |
atcttttg |
329 |
Q |
| |
|
|||||||| |
|
|
| T |
9067842 |
atcttttg |
9067835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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