View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19932_low_25 (Length: 365)
Name: NF19932_low_25
Description: NF19932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19932_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 316
Target Start/End: Complemental strand, 8505975 - 8505676
Alignment:
| Q |
17 |
aaattcaatagtagtgtttatttaatataggttcaagatgcatgtcattgctatggatacatgagactggttctactgcttttttgttgtaagaagttgt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8505975 |
aaattcaatagtagtgtttatttaatataggttcaagatgcatgtcattgctatggatacatgagaccggttctactgcttttttgttgtaagaagttgt |
8505876 |
T |
|
| Q |
117 |
ttctcaattttgtccttggtcgaattgatggggcaatcttggttacttattttaatttattcaacaggtggttttgtaaacaagtgatacacacacaaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8505875 |
ttctcaattttgtccttggtcgaattgatggggcaatcttggttacttattttaatttattcaacaggtggttttgtaaacaagtgatacacacacaaaa |
8505776 |
T |
|
| Q |
217 |
cagtctcatctaaacagtctcatttgtttatgccttgctgcacttagcacccacatctaaacagtcgtatttgttaatgttttactttacttgctgcctt |
316 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
8505775 |
cagtctcatctaaaccgtctcatttgtttatgccttgctgcacttagcacccacatctaaacagtcgcatttgttaatattttactttacttgctgcctt |
8505676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 316
Target Start/End: Original strand, 51648229 - 51648543
Alignment:
| Q |
17 |
aaattcaatagtagtgtttatttaatataggttcaagatgcatgtcattgctatggatacatgagactggttctactgcttttttgttgtaagaagttgt |
116 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||| |
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| T |
51648229 |
aaattcaatagtagtgtttatttaatataggttcaagatgcatgtcattgctatggatgcatgagaccggttctactgcttttttgttgtaaggagttgt |
51648328 |
T |
|
| Q |
117 |
ttctcaattttgtccttggtcgaattgatggggcaatcttggttacttattttaatttattcaacaggtggttttgtaaacaagtgatacacacacaaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51648329 |
ttctcaattttgtccttggtcgaattgatggggcaatcttggttacttattttaatttattcaacaggtggttttgtaaacaagtgatacacacacaaaa |
51648428 |
T |
|
| Q |
217 |
cagtctcatctaaacagtctcatt---------------tgtttatgccttgctgcacttagcacccacatctaaacagtcgtatttgttaatgttttac |
301 |
Q |
| |
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|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
51648429 |
caatctcatctaaacagtctcatttgtttatgccttccgtgtttatgccttgctgcacttagcacccacatctaaacagtctcatttgttaatgttttac |
51648528 |
T |
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| Q |
302 |
tttacttgctgcctt |
316 |
Q |
| |
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||||||||||||||| |
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| T |
51648529 |
tttacttgctgcctt |
51648543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 316
Target Start/End: Original strand, 20603588 - 20603902
Alignment:
| Q |
17 |
aaattcaatagtagtgtttatttaatataggttcaagatgcatgtcattgctatggatacatgagactggttctactgcttttttgttgtaagaagttgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||| |
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| T |
20603588 |
aaattcaatagtagtgtttatttaatataggttcaagatgcatgtcattgctatggatgcatgagaccggttctactgcttttttgttgtaaggagttgt |
20603687 |
T |
|
| Q |
117 |
ttctcaattttgtccttggtcgaattgatggggcaatcttggttacttattttaatttattcaacaggtggttttgtaaacaagtgatacacacacaaaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20603688 |
ttctcaattttgtccttggtcgaattgatggggcaatcttggttacttattttaatttattcaacaggtggttttgtaaacaagtgatacacacacaaaa |
20603787 |
T |
|
| Q |
217 |
cagtctcatctaaacagtctcatt---------------tgtttatgccttgctgcacttagcacccacatctaaacagtcgtatttgttaatgttttac |
301 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
20603788 |
cagtctcatctaaacagtctcatttgtttatgccttccgtgtttatgccttgctgcacttagcacccacatctaaacagtctcatttgttaatgttttac |
20603887 |
T |
|
| Q |
302 |
tttacttgctgcctt |
316 |
Q |
| |
|
||||||||||||||| |
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| T |
20603888 |
tttacttgctgcctt |
20603902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 241 - 316
Target Start/End: Complemental strand, 30848725 - 30848650
Alignment:
| Q |
241 |
tgtttatgccttgctgcacttagcacccacatctaaacagtcgtatttgttaatgttttactttacttgctgcctt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30848725 |
tgtttatgccttgctgcacttagcacccacatctaaacagtcttatttgttaatgttttactttacttgctgcctt |
30848650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 27 - 204
Target Start/End: Complemental strand, 13602648 - 13602454
Alignment:
| Q |
27 |
gtagtgtttatttaatataggttcaagatgcatgtcattgctatggatacatgagactggttctactgcttttttgttgtaagaagttgtttctcaa--t |
124 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||||| || || ||||||||||||||| |||||| ||||||||||||| || | |
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| T |
13602648 |
gtagtgtttatttaatataggttcaaggtgcaagtcattgctatggat----gaaaccggttctactgcttttgtgttgttagaagttgtttctaaaatt |
13602553 |
T |
|
| Q |
125 |
tttg-------------------tccttggtcgaattgatggggcaatcttggttacttattttaatttattcaacaggtggttttgtaaacaagtgat |
204 |
Q |
| |
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|||| | ||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13602552 |
tttgggacgaaatgttcgatattttcttggtcgagctgatggggcaatcttagttacttattttaatttattcaactggtggttttgtaaacaagtgat |
13602454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 279
Target Start/End: Original strand, 13948838 - 13948876
Alignment:
| Q |
241 |
tgtttatgccttgctgcacttagcacccacatctaaaca |
279 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||| |
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|
| T |
13948838 |
tgtttatgccttgctgcacttagaacccacgtctaaaca |
13948876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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